1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attactcattgtttgaagtgtaattaatcaaaatccgtgctaacataatgttgtgagttcaaaagtcaaaactaagctttggttttcttgattatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTTCGTCAGCTGGTTATGCACATTGCTGGGACTTAAG
species | Zea mays |
transcript | GRMZM2G087105_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACCTCAGGGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGG CAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTTEST: gi|76011997|gb|DT939167.1|DT939167
genomic: AACCTCAGGGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGGgtaagcattc ... attatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTT
EST: AACCTCAGGGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGG CAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTTEST: gi|211348374|gb|FL045514.1|FL045514
genomic: AACCTCAGGGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGGgtaagcattc ... attatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTT
EST: AACCTCAGGGCARAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGG CAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTTEST: gi|37377364|gb|CF625279.1|CF625279
genomic: AACCTCAGGGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGGgtaagcattc ... attatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTT
EST: TAAAATCAGATCATGGACCATTGG CAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTTEST: gi|78544333|gb|DV621831.1|DV621831
genomic: TAAAATCAGATCATGGACCATTGGgtaagcattc ... attatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTT
EST: GGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGG CAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTTEST: gi|211348372|gb|FL045512.1|FL045512
genomic: GGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGGgtaagcattc ... attatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTT
EST: AACCTCAGGGCAGAAGTTACGTGTTCTAAAANCAGATCATGGACCATTGG CAATAAGATCCTTATCTTCCTGCACAAATTCACACANGATATTTGCTGGTTEST: gi|76021370|gb|DT948540.1|DT948540
genomic: AACCTCAGGGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGGgtaagcattc ... attatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTT
EST: AACCTCAGGGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGG CAATAAGATCCTTATCTTCCTGCACAAATTCACCCCTGATATTTGCTGGTTEST: gi|76011998|gb|DT939168.1|DT939168
genomic: AACCTCAGGGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGGgtaagcattc ... attatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTT
EST: AACCTCAGGGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGG CAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTTEST: gi|71441000|gb|DR822050.1|DR822050
genomic: AACCTCAGGGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGGgtaagcattc ... attatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTT
EST: GGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGG CAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTTEST: gi|78107837|gb|DV526255.1|DV526255
genomic: GGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGGgtaagcattc ... attatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTT
EST: AACCTCAGGGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGG CAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTTEST: gi|211348369|gb|FL045509.1|FL045509
genomic: AACCTCAGGGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGGgtaagcattc ... attatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTT
EST: CAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGG CAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTTEST: gi|76021369|gb|DT948539.1|DT948539
genomic: CAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGGgtaagcattc ... attatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTT
EST: GGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGG CAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTTEST: gi|7216529|gb|AW562651.1|AW562651
genomic: GGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGGgtaagcattc ... attatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTT
EST: AACCTCAGGGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGG CAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTTEST: gi|74238279|gb|DT646193.1|DT646193
genomic: AACCTCAGGGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGGgtaagcattc ... attatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTT
EST: CAGATCATGGACCATTGG CAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTTEST: gi|211348368|gb|FL045508.1|FL045508
genomic: CAGATCATGGACCATTGGgtaagcattc ... attatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTT
EST: TAGGTGTTCTAAAATCAGATCATGGACCATTGG CAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTTEST: gi|211348375|gb|FL045515.1|FL045515
genomic: TAGGTGTTCTAAAATCAGATCATGGACCATTGGgtaagcattc ... attatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTT
EST: CAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGG CAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTTEST: gi|148986028|gb|EE029875.2|EE029875
genomic: CAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGGgtaagcattc ... attatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTT
EST: AACCTCAGGGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGG CAATAAGATCCTTTATCTTCCTGCACAAATTCACACATGATATTTGGTGGT
genomic: AACCTCAGGGCAGAAGTTAGGTGTTCTAAAATCAGATCATGGACCATTGGgtaagcattc ... attatttcagCAATAAGATCC-TTATCTTCCTGCACAAATTCACACATGATATTTGCTGGT
taatgttgtgagttcaaaagtcaaaactaagctttggttttcttgattatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTTCGTCAGCTGGTTATGCACATTGCTGGGACTTAAG
tcttgat putative branch site (score: 4)
ttatttc CT-rich tract
ttttcttgattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attactcattgtttgaagtgtaattaatcaaaatccgtgctaacataatgttgtgagttcaaaagtcaaaactaagctttggttttcttgattatttcagCAATAAGATCCTTATCTTCCTGCACAAATTCACACATGATATTTGCTGGTTCGTCAGCTGGTTATGCACATTGCTGGGACTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG