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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttcgcctctactttcggtgtggcggtgcggattatgtctgtcatccacgaatgaagaaataatgtctctgaatgcaatgagcagGCTGTCCTCCGATCACGGAGCCATGGGGATGTAAAGTTCACCATTGTAGGCGAGTTATACCCCCCAACCTAATCATA

Basic information

species Zea mays
transcript GRMZM2G086614_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086614_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g21140.1 (Oryza sativa), 3'ss of exon 7
gtttgttcgcctctactttcggtgtggcggtgcggattatgtct-gtcatccacgaatgaagaaataatgtctctgaatgcaatgagcagGCTGTCCTCCGATCACGGAGCCATGGGGATGTAAAGTTCACCATTGTAGGCGAGTTATACCCCCCAACCTAATCATA
|| ||   || | |||| |   | |   | ||      || ||| || ||| | |  ||||   ||    |   |||| ||||| ||||||||| |||| ||||||||||| || |||||||||||||| |     | |  |||| | | |||||| ||||||||||
gtatg---gcatgtactgtgattatattgatggatccgatatcttgtgatcgatgcttgaaatgat----ttggtgaacgcaataagCAGGCTGGCCTCTGATCACGGAGCGATTGGGATGTAAAGTTCTCTGCAATGGATGAGTGA-ATCCCCCAGCCTAATCATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattatgtctgtcatccacgaatgaagaaataatgtctctgaatgcaatgagcagGCTGTCCTCCGATCACGGAGCCATGGGGATGTAAAGTTCACCATTGTAGGCGAGTTATACCCCCCAACCTAATCATA
                    aatgaagaaataat  TA-rich tract