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gtaaaatcttctgctcatgaagtgcttaattaatttgaactatttttttagaaaaacaaaatttggcagtaaaaaatatctcttcttatcttgctatcttttggcagCTCTGTTAGTGTGGAGGAGCCAGATTATTCAATATATACAAGGGCAAGATACATGAAGGAATATTCTGAAACAGTAATTCTAAACTGCAGCGATGTTGTT
species | Zea mays |
transcript | GRMZM2G079468_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAG CTCTGTTAGTGTGGAGGAGCCAGATTATTCAATATATACAAGGGCAAGATAEST: gi|76289273|gb|DV028841.1|DV028841
genomic: TCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAGgtaaaatctt ... cttttggcagCTCTGTTAGTGTGGAGGAGCCAGATTATTCAATATATACAAGGGCAAGATA
EST: TCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAG CTCTGTTAGTGTGGAGGAGCCAGATTNATTCA-TATATACAAGGGCAAGAT
genomic: TCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAGgtaaaatctt ... cttttggcagCTCTGTTAGTGTGGAGGAGCCAGATT-ATTCAATATATACAAGGGCAAGAT
aaaacaaaatttggcagtaaaaaatatctcttcttatcttgctatcttttggcagCTCTGTTAGTGTGGAGGAGCCAGATTATTCAATATATACAAGGGCAAGATACATGAAGGAATATTCTGAAACAGTAATTCTAAACTGCAGCGATGTTGTT
tctcttcttatcttgc CT-rich tract
taaaaaatatctctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatcttctgctcatgaagtgcttaattaatttgaactatttttttagaaaaacaaaatttggcagtaaaaaatatctcttcttatcttgctatcttttggcagCTCTGTTAGTGTGGAGGAGCCAGATTATTCAATATATACAAGGGCAAGATACATGAAGGAATATTCTGAAACAGTAATTCTAAACTGCAGCGATGTTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG