1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atgaaccaccaaccccttgtctgatcttcagaaagtagcaaaattttccttatcagtgcattgcttcttggtggccttaacatgttctctaatgatgcagTGAGGATCACGAGGATGAAGCAGGCGGAGCAGCAAAGGGATTCTGTCTCGGTCCAGCACGTGGAGACGCTGAAGCAGAAGGTCATGAGGCTCCGGAAGGA
species | Zea mays |
transcript | GRMZM2G067350_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGAGGAGAAAAAGGACATTCACAGGAAGCTTCAGAATGTGGAAAACGAGT TGAGGATCACGAGGATGAAGCAGGCGGAGCAGCAAAGGGATTCTGTCTCGGEST: gi|149016977|gb|EE045644.2|EE045644
genomic: AGAGGAGAAAAAGGACATTCACAGGAAGCTTCAGAATGTGGAAAACGAGTgtatgttcga ... aatgatgcagTGAGGATCACGAGGATGAAGCAGGCGGAGCAGCAAAGGGATTCTGTCTCGG
EST: AGAGGAGAAAAAGGACATTCACAGGAAGCTTCAGAATGTGGAAAACGAGT TGAGGATCACGAGGATGAAGCAGGCGGAGCAGCAAAGGGATTCTGTEST: gi|211056573|gb|FL481095.1|FL481095
genomic: AGAGGAGAAAAAGGACATTCACAGGAAGCTTCAGAATGTGGAAAACGAGTgtatgttcga ... aatgatgcagTGAGGATCACGAGGATGAAGCAGGCGGAGCAGCAAAGGGATTCTGT
EST: AGAGGAGAAAAAGGACATTCACAGGAAGCTTCAGAATGTGGAAAACGAGT TGAGGATCACGAGGATGAAGCAGGCGGAGCAGCAAAGGGATTCTGTCTCGGEST: gi|149016976|gb|EE154303.2|EE154303
genomic: AGAGGAGAAAAAGGACATTCACAGGAAGCTTCAGAATGTGGAAAACGAGTgtatgttcga ... aatgatgcagTGAGGATCACGAGGATGAAGCAGGCGGAGCAGCAAAGGGATTCTGTCTCGG
EST: AGAGGAGAAAAAGGACATTCACAGGAAGCTTCAGAATGTGGAAAACGAGT TGAGGATCACGAGGATGAAGCAGGCGGAGCAGCAAAGGGATTCTGTTTCGGEST: gi|32798246|gb|CD950482.1|CD950482
genomic: AGAGGAGAAAAAGGACATTCACAGGAAGCTTCAGAATGTGGAAAACGAGTgtatgttcga ... aatgatgcagTGAGGATCACGAGGATGAAGCAGGCGGAGCAGCAAAGGGATTCTGTCTCGG
EST: AGAGGAGAAAAAGGACATTCACAGGAAGCTTCAGAATGTGGAAAACGAGT TGAGGATCACGAGGATGAAGCAGGCGGAGCAGCAAAGGGATTCTGTCTCGG
genomic: AGAGGAGAAAAAGGACATTCACAGGAAGCTTCAGAATGTGGAAAACGAGTgtatgttcga ... aatgatgcagTGAGGATCACGAGGATGAAGCAGGCGGAGCAGCAAAGGGATTCTGTCTCGG
ttccttatcagtgcattgcttcttggtggccttaacatgttctctaatgatgcagTGAGGATCACGAGGATGAAGCAGGCGGAGCAGCAAAGGGATTCTGTCTCGGTCCAGCACGTGGAGACGCTGAAGCAGAAGGTCATGAGGCTCCGGAAGGA
ctctaat putative branch site (score: 3)
ttctcta CT-rich tract
ttaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaaccaccaaccccttgtctgatcttcagaaagtagcaaaattttccttatcagtgcattgcttcttggtggccttaacatgttctctaatgatgcagTGAGGATCACGAGGATGAAGCAGGCGGAGCAGCAAAGGGATTCTGTCTCGGTCCAGCACGTGGAGACGCTGAAGCAGAAGGTCATGAGGCTCCGGAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - caccaac
- - - - - - - - - - - - - - - - -agtagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttc