1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtacatgcagcttcataatgtttcactagcttctgcactgcacatgtttgcttttgaacaaattactgacgttacctatacagAGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTGCCAGCTGACCTAATGGATGACAGCACGATGAGCAAGCAGTACGAGGAGC
species | Zea mays |
transcript | GRMZM2G066867_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGAGTGCCAAAATCTTGTCTCTAGGATTTTCGTCGCCGACCCAGCCACC AGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTGEST: gi|148929967|gb|EE285791.2|EE285791
genomic: CAGAGTGCCAAAATCTTGTCTCTAGGATTTTCGTCGCCGACCCAGCCACCgtgagtacat ... acctatacagAGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTG
EST: CCAAAATCTTGTCTCTAGGATTTTGGTCGCCGACCCAGCCACC AGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTGEST: gi|148965109|gb|EE015923.2|EE015923
genomic: CCAAAATCTTGTCTCTAGGATTTTCGTCGCCGACCCAGCCACCgtgagtacat ... acctatacagAGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTG
EST: CAGAGTGCCAAAATCTTGTCTCTAGGATTTTCGTCGCCGACCCAGCCACC AGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTGEST: gi|166452070|gb|EG159020.1|EG159020
genomic: CAGAGTGCCAAAATCTTGTCTCTAGGATTTTCGTCGCCGACCCAGCCACCgtgagtacat ... acctatacagAGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTG
EST: TCGCCGACCCAGCCACC AGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTGEST: gi|148970785|gb|EE021537.2|EE021537
genomic: TCGCCGACCCAGCCACCgtgagtacat ... acctatacagAGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTG
EST: CAGAGTGCCAAAATCTTGTCTCTAGGATTTTCGTCGCCGACCCAGCCACC AGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTGEST: gi|149031690|gb|EE154871.2|EE154871
genomic: CAGAGTGCCAAAATCTTGTCTCTAGGATTTTCGTCGCCGACCCAGCCACCgtgagtacat ... acctatacagAGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTG
EST: CAGAGTGCCAAAATCTTGTCTCTAGGATTTTCGTCGCCGACCCAGCCACC AGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTGEST: gi|148943768|gb|EC888839.2|EC888839
genomic: CAGAGTGCCAAAATCTTGTCTCTAGGATTTTCGTCGCCGACCCAGCCACCgtgagtacat ... acctatacagAGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTG
EST: CAGAGTGCCAAAATCTTGTCTCTAGGATTTTCGTCGCCGACCCAGCCACC AGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTGEST: gi|71313390|gb|DR793246.1|DR793246
genomic: CAGAGTGCCAAAATCTTGTCTCTAGGATTTTCGTCGCCGACCCAGCCACCgtgagtacat ... acctatacagAGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTG
EST: CAGAGTGCCAAAATCTTGTCTCTAGGATTTTCGTCGCCGACCCAGCCACC AGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTGEST: gi|110196067|gb|EC877964.1|EC877964
genomic: CAGAGTGCCAAAATCTTGTCTCTAGGATTTTCGTCGCCGACCCAGCCACCgtgagtacat ... acctatacagAGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTG
EST: CAGAGTGCCAAAATCTTGTCTTTAGGATTTTTGTTGCCGACCCAGCCACC AGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTG
genomic: CAGAGTGCCAAAATCTTGTCTCTAGGATTTTCGTCGCCGACCCAGCCACCgtgagtacat ... acctatacagAGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTG
gcttctgcactgcacatgtttgcttttgaacaaattactgacgttacctatacagAGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTGCCAGCTGACCTAATGGATGACAGCACGATGAGCAAGCAGTACGAGGAGC
tactgac putative branch site (score: 107)
ttttgaacaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtacatgcagcttcataatgtttcactagcttctgcactgcacatgtttgcttttgaacaaattactgacgttacctatacagAGGATCACCATCCCTGAGATAAGGAACCATCCATGGTTCTTGAAGAACCTGCCAGCTGACCTAATGGATGACAGCACGATGAGCAAGCAGTACGAGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG