1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatctgggtttgccatacctgtgactaaatttagttcctttgctccataacgatatctagttgctaaacagcagcatacctttcaatgcagATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTAGGCAAGTTACTTGTGAGAGCGAACTGAAGCTAACAGTGGCCGTGGAAGC
species | Zea mays |
transcript | GRMZM2G062416_T04 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAG ATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTAEST: gi|78105508|gb|DV523926.1|DV523926
genomic: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAGgtaatctggg ... ttcaatgcagATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTA
EST: TCTGTTGAGACAATCCTGGAGCAG ATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTAEST: gi|211157823|gb|FL476882.1|FL476882
genomic: TCTGTTGAGACAATCCTGGAGCAGgtaatctggg ... ttcaatgcagATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTA
EST: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAG ATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTAEST: gi|71770625|gb|DR968562.1|DR968562
genomic: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAGgtaatctggg ... ttcaatgcagATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTA
EST: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAG ATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTAEST: gi|211031482|gb|FL468605.1|FL468605
genomic: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAGgtaatctggg ... ttcaatgcagATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTA
EST: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAG ATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTAEST: gi|113832668|gb|DW950426.1|DW950426
genomic: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAGgtaatctggg ... ttcaatgcagATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTA
EST: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAG ATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATAEST: gi|32908945|gb|CF013758.1|CF013758
genomic: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAGgtaatctggg ... ttcaatgcagATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATA
EST: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAG ATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTAEST: gi|33097224|gb|CF057184.1|CF057184
genomic: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAGgtaatctggg ... ttcaatgcagATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTA
EST: GTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAG ATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTAEST: gi|71324038|gb|DR798706.1|DR798706
genomic: GTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAGgtaatctggg ... ttcaatgcagATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTA
EST: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAG ATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTAEST: gi|71770099|gb|DR968036.1|DR968036
genomic: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAGgtaatctggg ... ttcaatgcagATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTA
EST: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAG ATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTAEST: gi|78074248|gb|DV502682.1|DV502682
genomic: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAGgtaatctggg ... ttcaatgcagATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTA
EST: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAG ATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTA
genomic: AATCATTTGTAATGGTACAGGACTTATCTGTTGAGACAATCCTGGAGCAGgtaatctggg ... ttcaatgcagATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTA
cctttgctccataacgatatctagttgctaaacagcagcatacctttcaatgcagATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTAGGCAAGTTACTTGTGAGAGCGAACTGAAGCTAACAGTGGCCGTGGAAGC
tgctaaa putative branch site (score: 2)
tacctttc putative PPT
atatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatctgggtttgccatacctgtgactaaatttagttcctttgctccataacgatatctagttgctaaacagcagcatacctttcaatgcagATACTACGTAATCTCACCTTTGAGGAGCAGCGTGAGCTATATGGACAGCTAGGCAAGTTACTTGTGAGAGCGAACTGAAGCTAACAGTGGCCGTGGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG