Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatcaaatggctccaaagtatatgaactgaagaaggcatacatgaatttgtacatttatacaatacattatctggtgtacatgtcatgttatcagTTATGTTATGTGGATCCTGGAATTGCTAGTTCAGAAGAGATGGAGCAACTGAAGACTATTGATAGTATGCTTGTCAGGTTTTAGGTTCCTGGTAAGTGTG

Basic information

species Zea mays
transcript GRMZM2G053676_T04
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G053676_T04 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g01710.3 (Oryza sativa), 3'ss of exon 5
gtacatcaaatggctccaaagtatatgaactgaagaaggcatacatgaatttgtaca-tttatacaatacattatctggtgtacatgtcatgttatcagTTATGTTATGTGGATCCTGGAATTGCTAGTTCAGAAGAGATGGAGCAACTGAAGACTATTGATAGTATGCTTGTCAGGTTTTAGGTTCCTGGTAAGTGTG
|||||||||||  | ||||| | ||||||||    ||||           |||| || || |||||||      |||| | | | |   || || |||||| || |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || |||||||| |||  | |||         
gtacatcaaatcac-ccaaaatttatgaactttgaaaggg----------ttgtgcagttcatacaat------tctgatatgccttcgatttt-tcagTTGTGCTATGTGGATCCTGGAATTGCTAGTTCAGAAGAAATGGAGCAGCTGAAAACTATTGATAGTATCCTGGTCAGGTTCTAGAATGCTG---------

upper sequence: GRMZM2G053676_T04 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g01710.4 (Oryza sativa), 3'ss of exon 5
gtacatcaaatggctccaaagtatatgaactgaagaaggcatacatgaatttgtaca-tttatacaatacattatctggtgtacatgtcatgttatcagTTATGTTATGTGGATCCTGGAATTGCTAGTTCAGAAGAGATGGAGCAACTGAAGACTATTGATAGTATGCTTGTCAGGTTTTAGGTTCCTGGTAAGTGTG
|||||||||||  | ||||| | ||||||||    ||||           |||| || || |||||||      |||| | | | |   || || |||||| || |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || |||||||| |||  | |||||  ||   
gtacatcaaatcac-ccaaaatttatgaactttgaaaggg----------ttgtgcagttcatacaat------tctgatatgccttcgatttt-tcagTTGTGCTATGTGGATCCTGGAATTGCTAGTTCAGAAGAAATGGAGCAGCTGAAAACTATTGATAGTATCCTGGTCAGGTTCTAGAATGCTGGTGCGTACA

upper sequence: GRMZM2G053676_T04 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA06G14440.1 (Glycine max), 3'ss of exon 3
gtacatcaaatggctccaaagtatatgaactgaagaaggcatacatgaatttgt-acatttatacaatacattatctggtgtacatgtcatgttatcagTTATGTTATGTGGATCCTGGAATTGCTAGTTCAGAAGAGATGGAGCAACTGAAGACTATTGATAGTATGCTTGTCAGGTTTTAGGTTCCTGGTAAGTGTG
              ||  |  | | | |||  | |     ||  |  | |   |  ||   |||      |  ||     |||    |  |||| |||||| |||||||| ||||||||||| ||||||   || ||||||||  |||| ||||| ||||||||| |  |  |    |||                   
-------------gtcttacttcttttaacaaatgttaaaatttacaattgcattgcaccaataatgattaggattgatggtattgtttctgtt-tcagTTGTGTTATGTTGATCCTGGAATCGCTAGTGAGGAGGAGATGGAAAAACTCAAGACAATTGATAGTGTCTTCCTTGAATTT-------------------

upper sequence: GRMZM2G053676_T04 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA02G38520.1 (Glycine max), 3'ss of exon 3
gtacatcaaatggctccaaagtatatgaactgaagaaggcatacatgaatttgtacatttatacaatacattatctggtgtacatgtcatgttatcagTTATGTTATGTGGATCCTGGAATTGCTAGTTCAGAAGAGATGGAGCAACTGAAGACTATTGATAGTATGCTTGTCAGGTTTTAGGTTCCTGGTAAGTGTG
            | |      | | | ||| ||||   | |   ||    |||||   || || |||     |  || ||  | |||     | |||||| |||||||| |||||||||||||| |||   || ||||||||  |||| ||||| ||||||||  |  |  |    |||||                 
------------gtttt----tcttttaaccgaagtttgta---attgccttgtaacattgtataatgag--acttgatggtcttgtttctatttcagTTGTGTTATGTTGATCCTGGAATTGCCAGTGAGGAGGAGATGGAAAAACTCAAGACAATTGATAGCGTCTTCCTTGAATTTTAA----------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgaatttgtacatttatacaatacattatctggtgtacatgtcatgttatcagTTATGTTATGTGGATCCTGGAATTGCTAGTTCAGAAGAGATGGAGCAACTGAAGACTATTGATAGTATGCTTGTCAGGTTTTAGGTTCCTGGTAAGTGTG
          tacatttatacaatac  TA-rich tract