1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtgatagcatctgcaaagttctgaagctattctttgaaatcataccggaagactcctattttgattccaactctaacgagttatttcttttgttatctagTGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAAGTTGGTCGGCGGAAGGCCTAAGCGCAAACCAAATTGGTCCTTTGCGCTG
species | Zea mays |
transcript | GRMZM2G030646_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAAEST: gi|14243773|gb|BG841436.2|BG841436
genomic: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaaatgtc ... tgttatctagTGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAA
EST: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAAEST: gi|31558627|gb|CD527839.1|CD527839
genomic: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaaatgtc ... tgttatctagTGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAA
EST: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAAEST: gi|211532623|gb|FL477973.1|FL477973
genomic: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaaatgtc ... tgttatctagTGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAA
EST: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAAEST: gi|148951303|gb|EC897010.2|EC897010
genomic: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaaatgtc ... tgttatctagTGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAA
EST: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAAEST: gi|37380869|gb|CF627276.1|CF627276
genomic: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaaatgtc ... tgttatctagTGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAA
EST: ATACTATTTTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAAEST: gi|110202221|gb|EC884118.1|EC884118
genomic: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaaatgtc ... tgttatctagTGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAA
EST: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAAEST: gi|74238048|gb|DT645962.1|DT645962
genomic: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaaatgtc ... tgttatctagTGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAA
EST: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAAEST: gi|74235080|gb|DT642994.1|DT642994
genomic: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaaatgtc ... tgttatctagTGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAA
EST: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAAEST: gi|211383295|gb|FL097265.1|FL097265
genomic: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaaatgtc ... tgttatctagTGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAA
EST: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAAEST: gi|60359724|gb|DN226697.1|DN226697
genomic: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaaatgtc ... tgttatctagTGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAA
EST: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAAEST: gi|71759681|gb|DR957618.1|DR957618
genomic: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaaatgtc ... tgttatctagTGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAA
EST: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG TGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAA
genomic: ATACTATTTTGTCCAAAGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaaatgtc ... tgttatctagTGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAA
cggaagactcctattttgattccaactctaacgagttatttcttttgttatctagTGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAAGTTGGTCGGCGGAAGGCCTAAGCGCAAACCAAATTGGTCCTTTGCGCTG
ctctaac putative branch site (score: 116)
tttcttttgttatct putative PPT
ttatttcttttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatagcatctgcaaagttctgaagctattctttgaaatcataccggaagactcctattttgattccaactctaacgagttatttcttttgttatctagTGTGGATCTTCACGGTCCGTTGCACCAATCAAAGCTGGATTCGTTGCGCAAGTTGGTCGGCGGAAGGCCTAAGCGCAAACCAAATTGGTCCTTTGCGCTG
- - - gcatctg
- - - - - - - - - - ctgaagc
- - - - - - - - - - - - - - - - - - - - cataccg