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...aatattctgctgctgaagtacccacactgtgttgcatttagcaagttacaaaacaacaatcaattttgcaaagacatgattaccggttcttcaactgcagATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAG
species | Zea mays |
transcript | GRMZM2G030299_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGCTCTGATAGCAATGGGGATCCTGTAATATTGGATCCTGCTTGCTACT ATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTGEST: gi|76283912|gb|DV023480.1|DV023480
genomic: AAGCTCTGATAGCAATGGGGATCCTGTAATATTGGATCCTGCTTGCTACTgtaagtaaaa ... tcaactgcagATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTG
EST: AAGCTCTGATAGCAATGGGGATCCTGTAATATTGGATCCTGCTTGCTACT ATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTGEST: gi|149108778|gb|EE189830.2|EE189830
genomic: AAGCTCTGATAGCAATGGGGATCCTGTAATATTGGATCCTGCTTGCTACTgtaagtaaaa ... tcaactgcagATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTG
EST: AAGCTTTGATAGCAATGGGGATCCTGTAATATTGGATCCTGCTTGCTACT ATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTGEST: gi|60348350|gb|DN215323.1|DN215323
genomic: AAGCTCTGATAGCAATGGGGATCCTGTAATATTGGATCCTGCTTGCTACTgtaagtaaaa ... tcaactgcagATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTG
EST: AAGCTCTGATAGCAATGGGGATCCTGTAATATTGGATCCTGCTTGCTACT ATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTGEST: gi|76288116|gb|DV027684.1|DV027684
genomic: AAGCTCTGATAGCAATGGGGATCCTGTAATATTGGATCCTGCTTGCTACTgtaagtaaaa ... tcaactgcagATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTG
EST: AAGCTCTGATAGCAATGGGGATCCTGTAATATTGGATCCTGCTTGCTACT ATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTGEST: gi|78544199|gb|DV621697.1|DV621697
genomic: AAGCTCTGATAGCAATGGGGATCCTGTAATATTGGATCCTGCTTGCTACTgtaagtaaaa ... tcaactgcagATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTG
EST: AAGCTCTGATAGCAATGGGGATCCTGTAATATTGGATCCTGCTTGCTACT ATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTGEST: gi|211523349|gb|FL468083.1|FL468083
genomic: AAGCTCTGATAGCAATGGGGATCCTGTAATATTGGATCCTGCTTGCTACTgtaagtaaaa ... tcaactgcagATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTG
EST: AAGCTCTGATAGCAATGGGGATCCTGTAATATTGGATCCTGCTTGCTACT ATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTGEST: gi|76283911|gb|DV023479.1|DV023479
genomic: AAGCTCTGATAGCAATGGGGATCCTGTAATATTGGATCCTGCTTGCTACTgtaagtaaaa ... tcaactgcagATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTG
EST: AAGCTTTGATAGCAATGGGGATCCTGTAATATTGGATCCTGCTTGCTACT ATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTG
genomic: AAGCTCTGATAGCAATGGGGATCCTGTAATATTGGATCCTGCTTGCTACTgtaagtaaaa ... tcaactgcagATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTG
ttacaaaacaacaatcaattttgcaaagacatgattaccggttcttcaactgcagATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAG
ttcttc CT-rich tract
aatcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatattctgctgctgaagtacccacactgtgttgcatttagcaagttacaaaacaacaatcaattttgcaaagacatgattaccggttcttcaactgcagATGGACACAACGAGGCAGAGTTTGGGATGTCCTGGTGTGCTGGATTTGGTGGGGACTTCTACAACGCCTATTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - gctgctg
- - - - - - - - - - -ccacact
- - - - - - - - - - - - - - -tgttgca
- - - - - - - - - - - - - - - - - - - - - - - - -aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgatt