1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...catgaagttttttttcttcttgttaaaataggttttggtgcactcatgaattcatgaagtgtgatcgttttctattgccgttgccacccttgtttcccagGCGAGATCCATCTTCAGCTTAGGGTTCTACAGCTTGGTGGCAGTGCCGTCGGTGGTTGCGGTGATGAACGTATTTTGGTTCTGGAAGATACTCAAGGGGA
species | Zea mays |
transcript | GRMZM2G021589_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAATCTTATTCATATATATGTTCACCCATATGTATTTTCATCTTGATCAG GCGAGATCCATCTTCAGCTTAGGGTTCTACAGCTTGGTGGCAGTGCCGTCG
genomic: TAATCTTATTCATATATATGTTCACCCATATGTATTTTCATCTTGATCAGgtatgggtat ... tgtttcccagGCGAGATCCATCTTCAGCTTAGGGTTCTACAGCTTGGTGGCAGTGCCGTCG
atgaattcatgaagtgtgatcgttttctattgccgttgccacccttgtttcccagGCGAGATCCATCTTCAGCTTAGGGTTCTACAGCTTGGTGGCAGTGCCGTCGGTGGTTGCGGTGATGAACGTATTTTGGTTCTGGAAGATACTCAAGGGGA
ccacccttgtttccc CT-rich tract
ttttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgaagttttttttcttcttgttaaaataggttttggtgcactcatgaattcatgaagtgtgatcgttttctattgccgttgccacccttgtttcccagGCGAGATCCATCTTCAGCTTAGGGTTCTACAGCTTGGTGGCAGTGCCGTCGGTGGTTGCGGTGATGAACGTATTTTGGTTCTGGAAGATACTCAAGGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
catgaag
- - - - - - - -cttcttg
- - - - - - - - - - - - aaaatagg
- - - - - - - - - - - - - - - - - - ggtgcac
- - - - - - - - - - - - - - - - - - - - - - - - -attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgcca