1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acataccagtttatgactcagtttatagaaattagattctcagtttcttaaaaactgggttgcttccaaacagggcctaatatacctcacatatgaacagGCCTACACATATCTAGACGAAGCACACAGTATTGGAGCTGTTGGGAAAACAGGGAGAGGTGTTTGTGAGCTGCTCGGAGTGGATCCAGCTGATGTTGACA
species | Zea mays |
transcript | GRMZM2G010202_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGGAGCTATGCAAACTCCCTGAGGTTATTTCTGTCTGCAAGAAATACAAG GCCTACACATATTTAGACGAAGCACACAGTATTGGAGCEST: gi|24934602|gb|CA452820.1|CA452820
genomic: GGGAGCTATGCAAACTCCCTGAGGTTATTTCTGTCTGCAAGAAATACAAGgtttgagttt ... atatgaacagGCCTACACATATCTAGACGAAGCACACAGTATTGGAGC
EST: GGGAGCTATGCAAACTCCCTGAGGTTATTTCTGTCTGCAAGAAATACAAG GCCTACACATATTTAGACGAAGCACACAGTATTGGAGCTGTTGGGAAAACAEST: gi|87156277|gb|DY401066.1|DY401066
genomic: GGGAGCTATGCAAACTCCCTGAGGTTATTTCTGTCTGCAAGAAATACAAGgtttgagttt ... atatgaacagGCCTACACATATCTAGACGAAGCACACAGTATTGGAGCTGTTGGGAAAACA
EST: GGGAGCTATGCAAACTCCCTGAGGTTATTTCTGTCTGCAAGAAATACAAG GCCTACACATATTTAGACGAAGCACACAGTATTGGAGCTGTTGGGAAAACA
genomic: GGGAGCTATGCAAACTCCCTGAGGTTATTTCTGTCTGCAAGAAATACAAGgtttgagttt ... atatgaacagGCCTACACATATCTAGACGAAGCACACAGTATTGGAGCTGTTGGGAAAACA
tcttaaaaactgggttgcttccaaacagggcctaatatacctcacatatgaacagGCCTACACATATCTAGACGAAGCACACAGTATTGGAGCTGTTGGGAAAACAGGGAGAGGTGTTTGTGAGCTGCTCGGAGTGGATCCAGCTGATGTTGACA
acctcac putative branch site (score: 3)
taatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acataccagtttatgactcagtttatagaaattagattctcagtttcttaaaaactgggttgcttccaaacagggcctaatatacctcacatatgaacagGCCTACACATATCTAGACGAAGCACACAGTATTGGAGCTGTTGGGAAAACAGGGAGAGGTGTTTGTGAGCTGCTCGGAGTGGATCCAGCTGATGTTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT