1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcagatgtttagtagaatagcctgttgttgagtgtagcaagatcaatgattcagtgataacaaagtgacttaccttctccttcatctgtgcacgttcaagATTTACTCAGAGCATCTGTTGCAACCTCTAATGGAGACAATTACTGCATTATCTGGTCCCAAAACAAAAATATTG
species | Zea mays |
transcript | GRMZM2G471805_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTT ATTTACTCAGAGCATCTGTTGCAACCTCTAATGGAGACAATTACTGCATTAEST: gi|60395803|gb|DN228673.1|DN228673
genomic: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTTgtaagtttgg ... cacgttcaagATTTACTCAGAGCATCTGTTGCAACCTCTAATGGAGACAATTACTGCATTA
EST: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTT ATTTACTCAGAGCATCTGTTGCAACCTCTAATGGAGACAATTACTGCATTAEST: gi|211175782|gb|FL245447.1|FL245447
genomic: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTTgtaagtttgg ... cacgttcaagATTTACTCAGAGCATCTGTTGCAACCTCTAATGGAGACAATTACTGCATTA
EST: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTT ATTTACTCAGAGCATCTGTTGCAACCTCTAATGGAGACAATTACTGCATTAEST: gi|211341427|gb|FL403611.1|FL403611
genomic: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTTgtaagtttgg ... cacgttcaagATTTACTCAGAGCATCTGTTGCAACCTCTAATGGAGACAATTACTGCATTA
EST: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTT ATTTACTCAGAGCATCTGTTGCAACCTCTAATGGAGACAATTACTGCATTAEST: gi|211442064|gb|FL421101.1|FL421101
genomic: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTTgtaagtttgg ... cacgttcaagATTTACTCAGAGCATCTGTTGCAACCTCTAATGGAGACAATTACTGCATTA
EST: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTT ATTTACTCAGAGCATCTGTTGCAACCTCTAATGGAGACAATTACTGCATTA
genomic: ATATCAAGGCCGTTGAACCTCCATTTGATTACATTATTGGAACTGACGTTgtaagtttgg ... cacgttcaagATTTACTCAGAGCATCTGTTGCAACCTCTAATGGAGACAATTACTGCATTA
atgattcagtgataacaaagtgacttaccttctccttcatctgtgcacgttcaagATTTACTCAGAGCATCTGTTGCAACCTCTAATGGAGACAATTACTGCATTATCTGGTCCCAAAACAAAAATATTG
gacttac putative branch site (score: 2)
ataacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagatgtttagtagaatagcctgttgttgagtgtagcaagatcaatgattcagtgataacaaagtgacttaccttctccttcatctgtgcacgttcaagATTTACTCAGAGCATCTGTTGCAACCTCTAATGGAGACAATTACTGCATTATCTGGTCCCAAAACAAAAATATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
gcagatg
- - - - - - - - - - cctgttg
- - - - - - - - - - - - - - - - tgtagca
- - - - - - - - - - - - - - - - - - - - - - - tgattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -taacaaa