1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...atataaatgtttaatttctcagtctgtgtttttttagtacatcaggaccccttcacttcttgttacgtgtctaatagactaaaatctacatttgttgcagTTCTTCCAGCCTTCTCTGGCAACATCCCAGCTGCGTTAAAGTCAAAGTTCCCTTCAGCTAAAGTCACTCACCTTGGAAACTG
species | Zea mays |
transcript | GRMZM2G443903_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCTTCAAAAGAGAATCCTTTCTAGGATGTACTCTTTTGGCATGTTCCCAG TTCTTCCAGCCTTCTCTGGCAACATCCCAGCTGCATTAAAGTCAAAGTTCCEST: gi|18659611|gb|BM500428.1|BM500428
genomic: TCTTCAAAAGAAAATCCTTTCTAGGATGTACTCTTTTGGCATGTTCCCAGgtggcacttc ... tttgttgcagTTCTTCCAGCCTTCTCTGGCAACATCCCAGCTGCGTTAAAGTCAAAGTTCC
EST: TCTTCAAAAGAAAATCCTTTCTAGGATGTACTCTTTTGGCATGTTCCCAG TTCTTCCAGCCTTCTCTGGCAACATCCCAGCTGCATTAAAGTCAAAGTTCCEST: gi|32826913|gb|CD966591.1|CD966591
genomic: TCTTCAAAAGAAAATCCTTTCTAGGATGTACTCTTTTGGCATGTTCCCAGgtggcacttc ... tttgttgcagTTCTTCCAGCCTTCTCTGGCAACATCCCAGCTGCGTTAAAGTCAAAGTTCC
EST: TCTTCAAAAGAAAATCCTTTCTAGGATGTACTCTTTTGGCATGTTCCCAG TTCTTCCAGCCTTCTCTGGCAACATCCCAGCTGC
genomic: TCTTCAAAAGAAAATCCTTTCTAGGATGTACTCTTTTGGCATGTTCCCAGgtggcacttc ... tttgttgcagTTCTTCCAGCCTTCTCTGGCAACATCCCAGCTGC
gaccccttcacttcttgttacgtgtctaatagactaaaatctacatttgttgcagTTCTTCCAGCCTTCTCTGGCAACATCCCAGCTGCGTTAAAGTCAAAGTTCCCTTCAGCTAAAGTCACTCACCTTGGAAACTG
gactaaa putative branch site (score: 37)
taatagactaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atataaatgtttaatttctcagtctgtgtttttttagtacatcaggaccccttcacttcttgttacgtgtctaatagactaaaatctacatttgttgcagTTCTTCCAGCCTTCTCTGGCAACATCCCAGCTGCGTTAAAGTCAAAGTTCCCTTCAGCTAAAGTCACTCACCTTGGAAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - tgtgttt
- - - - - - - - - - - - - - - - - - gtacatc