Sequence
atgc intronic sequence ATGC exonic sequencegtatttttgctcttcttacattcattcccctatgctttctgcactcctgttatcctgctaattcatccatgttgggattttacagGTTGTTTACGCAAAAACAGATCTAGCTGCAGGGTCAAAAGGAATAACTGCATTCATAATCGAGAAAGGGATGCCCGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G381051_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os05g03480.2 (Oryza sativa), 3'ss of exon 6
----------gtatttttgctcttcttacattcattcccctatgctt-----tctgcactcctgttat-cctgctaattcatccatgttgggattttacagGTTGTTTACGCAAAAACAGATCTAGCTGCAGGGTCAAAAGGAATAACTGCATTCATAATCGAGAAAGGGATGCCCGG
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aaacatctcttagcggtagcttccagaaaagcaagttatgtctgtttataggtctatagacataataagcctgctagttcactaaagttgggagttt-cagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG
upper sequence: GRMZM2G381051_T03 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA11G15900.1 (Glycine max), 3'ss of exon 7
---------gtatttttgctcttcttacattcattcccctatgctttctgcac-tcctgt-----tatcctgctaattcatccatgttgggattttacagGTTGTTTACGCAAAAACAGATCTAGCTGCAGGGTCAAAAGGAATAACTGCATTCATAATCGAGAAAGGGATGCCCGG
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agaaacaggatgctcatgtaatataaaacttgattttattatagttcagacatatgctgagaatgcatagcacgtatttgattgtgttgaattgaatcagGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGG
upper sequence: GRMZM2G381051_T03 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA12G07570.1 (Glycine max), 3'ss of exon 7
---------gtatttttgctcttcttacattcattcccctatgctttctgcac-tcctgt-----tatcctgctaattcatccatgttgggattttacagGTTGTTTACGCAAAAACAGATCTAGCTGCAGGGTCAAAAGGAATAACTGCATTCATAATCGAGAAAGGGATGCCCGG
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agaaacaggatgctcatgtaatataaaactatattttattatagttcagacatatgctgagaatgcataacacgtatttgattgtgttgaattgaatcagGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31352282|gb|CD436639.1|CD436639EST: GAATAAGATGTGGTGCACCAATGGCCCGTCTGCTCAGACACTG GTTGTTTACGCAAAAACAGATCTAGCTGCAGGGTCAAAAGGAATAACTGCA
genomic: GAATAAGATGTGGTGCACCAATGGCCCGTCTGCTCAGACACTGgtatttttgc ... gattttacagGTTGTTTACGCAAAAACAGATCTAGCTGCAGGGTCAAAAGGAATAACTGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgctttctgcactcctgttatcctgctaattcatccatgttgggattttacagGTTGTTTACGCAAAAACAGATCTAGCTGCAGGGTCAAAAGGAATAACTGCATTCATAATCGAGAAAGGGATGCCCGG
tgctaat putative branch site (score: 2)
taattcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatttttgctcttcttacattcattcccctatgctttctgcactcctgttatcctgctaattcatccatgttgggattttacagGTTGTTTACGCAAAAACAGATCTAGCTGCAGGGTCAAAAGGAATAACTGCATTCATAATCGAGAAAGGGATGCCCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA