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...tgggaaaataggaatcccttgggaaaatggagttgccaaactaaccctaaagatggcaaggaaaatgtagagagctgatttcttgcataatctattgtagTGTCACTGGAGTGGACAGAATTAGCTGTTACTGGATCTGTGCCACCTCCAAGATGTGGGCATTCGGCAACCATGATTGAGAAGAGACTCCTTATATTTGG
species | Zea mays |
transcript | GRMZM2G351160_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGATGGGATGGCAAAAAATGGCTTTCAGATGTATACATCATGGACACAA TGTCACTGGAGTGGACAGAATTAGCTGTTACTGGATCTGTGCCACCTCCAAEST: gi|60348204|gb|DN215177.1|DN215177
genomic: TGGATGGGATGGCAAAAAATGGCTTTCAGATGTATACATCATGGACACAAgtaggcaaac ... tctattgtagTGTCACTGGAGTGGACAGAATTAGCTGTTACTGGATCTGTGCCACCTCCAA
EST: TGGATGGGATGGCAAAAAATGGCTTTCAGATGTATACATCATGGACACAA TGTCACTGGAGTGGACAGAATTAGCTGTTACTEST: gi|76020393|gb|DT947563.1|DT947563
genomic: TGGATGGGATGGCAAAAAATGGCTTTCAGATGTATACATCATGGACACAAgtaggcaaac ... tctattgtagTGTCACTGGAGTGGACAGAATTAGCTGTTACT
EST: TGGATGGGATGGCAAAAAATGGCTTTCAGATGTATACATCATGGACACAA TGTCACTGGAGTGGACAGAATTAGCTGTTACTGGATCTGTGCCCCCTCCCAEST: gi|148938635|gb|EC882966.2|EC882966
genomic: TGGATGGGATGGCAAAAAATGGCTTTCAGATGTATACATCATGGACACAAgtaggcaaac ... tctattgtagTGTCACTGGAGTGGACAGAATTAGCTGTTACTGGATCTGTGCCACCTCCAA
EST: TGGATGGGATGGCAAAAAATGGCTTTCAGATGTATACATCATGGACACAA TGTCACTGGAGTGGACAGAATTAGCTGTTACTGGATCTGTGCCACCCTCCAEST: gi|148938619|gb|EC882949.2|EC882949
genomic: TGGATGGGATGGCAAAAAATGGCTTTCAGATGTATACATCATGGACACAAgtaggcaaac ... tctattgtagTGTCACTGGAGTGGACAGAATTAGCTGTTACTGGATCTGTGCCACC-TCCA
EST: TGGATGGGATGGCAAAAAATGGCTTTCAGATGTATACATCATGGACACAA TGTCACTGGAGTGGACAGAATTAGCTGTTACTGGATCTGTGCCACCTCCAA
genomic: TGGATGGGATGGCAAAAAATGGCTTTCAGATGTATACATCATGGACACAAgtaggcaaac ... tctattgtagTGTCACTGGAGTGGACAGAATTAGCTGTTACTGGATCTGTGCCACCTCCAA
cctaaagatggcaaggaaaatgtagagagctgatttcttgcataatctattgtagTGTCACTGGAGTGGACAGAATTAGCTGTTACTGGATCTGTGCCACCTCCAAGATGTGGGCATTCGGCAACCATGATTGAGAAGAGACTCCTTATATTTGG
agctgat putative branch site (score: 57)
ataatctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggaaaataggaatcccttgggaaaatggagttgccaaactaaccctaaagatggcaaggaaaatgtagagagctgatttcttgcataatctattgtagTGTCACTGGAGTGGACAGAATTAGCTGTTACTGGATCTGTGCCACCTCCAAGATGTGGGCATTCGGCAACCATGATTGAGAAGAGACTCCTTATATTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- -gaaaatag
- - - - - - - - - - - - - - - -gttgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggaaaa