1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgaatctatcacataaactgcgttgtcaagttactaaacatacatttcaaaatttgagttcgttttaatgttttctgatttgcttggtattgctctgcagGAGAGTGATATCAAGTGGGCTTCTCGCTGGGACACCTACTTGTTAATGATAGATGATCAAATTCACTGGTTTTCTATTGTGAACTCTCTCATGATCGTAC
species | Zea mays |
transcript | GRMZM2G180575_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGTTGAAGCCGGGAAGGAAATCATATTTACCTATGATGTAGGCTTCGAG GAGAGTGATATCAAGTGGGCTTCTCGCTGGGACACCTACTTGTTAATGATAEST: gi|160481330|gb|EY254264.1|EY254264
genomic: AGGTTGAAGCCGGGAAGGAAATCATATTTACCTATGATGTAGGCTTCGAGgtgatatttc ... tgctctgcagGAGAGTGATATCAAGTGGGCTTCTCGCTGGGACACCTACTTGTTAATGATA
EST: AGGTTGAAGCCGGGAAGGAAATCATATTTACCTATGATGTAGGCTTCGAG GAGAGTGATATCAAGTGGGCTTCTCGCTGGGA-ACCTACEST: gi|87155848|gb|DY400637.1|DY400637
genomic: AGGTTGAAGCCGGGAAGGAAATCATATTTACCTATGATGTAGGCTTCGAGgtgatatttc ... tgctctgcagGAGAGTGATATCAAGTGGGCTTCTCGCTGGGACACCTAC
EST: AGGTTGAAGCCGGGAAGGAAATCATATTTACCTATGATGTAGGCTTCGAG GAGAGTGATATCAAGTGGGCTTCTCGCTGGGACACCTACTTGTTAATGATAEST: gi|5928814|gb|AW056106.1|AW056106
genomic: AGGTTGAAGCCGGGAAGGAAATCATATTTACCTATGATGTAGGCTTCGAGgtgatatttc ... tgctctgcagGAGAGTGATATCAAGTGGGCTTCTCGCTGGGACACCTACTTGTTAATGATA
EST: ATCATATTTACCTATGATGTAGGCTTCGAG GAGAGTGATATCAAGTGGGCTTCTCGCTGGGACACCTACTTGTTAATGATAEST: gi|78117912|gb|DV536299.1|DV536299
genomic: ATCATATTTACCTATGATGTAGGCTTCGAGgtgatatttc ... tgctctgcagGAGAGTGATATCAAGTGGGCTTCTCGCTGGGACACCTACTTGTTAATGATA
EST: AGGTTGAAGCCGGGAAGGAAATCATATTTACCTATGATGTAGGCTTCGAG GAGAGTGATATCAAGTGGGCTTCTCGCTGGGACACCTACTTGTTAATGATA
genomic: AGGTTGAAGCCGGGAAGGAAATCATATTTACCTATGATGTAGGCTTCGAGgtgatatttc ... tgctctgcagGAGAGTGATATCAAGTGGGCTTCTCGCTGGGACACCTACTTGTTAATGATA
ttcaaaatttgagttcgttttaatgttttctgatttgcttggtattgctctgcagGAGAGTGATATCAAGTGGGCTTCTCGCTGGGACACCTACTTGTTAATGATAGATGATCAAATTCACTGGTTTTCTATTGTGAACTCTCTCATGATCGTAC
ttctgat putative branch site (score: 3)
ttgctct putative PPT
ttttaatgttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatctatcacataaactgcgttgtcaagttactaaacatacatttcaaaatttgagttcgttttaatgttttctgatttgcttggtattgctctgcagGAGAGTGATATCAAGTGGGCTTCTCGCTGGGACACCTACTTGTTAATGATAGATGATCAAATTCACTGGTTTTCTATTGTGAACTCTCTCATGATCGTAC
- - - - - acataaa
- - - - - - - - - - - - - - - - - - -acataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgg