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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtgaccatctgtagtattcgatgcctcccattttagctgtggcatcaactgattcgagactttgcacgttcagGGTATTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTCAAG

Basic information

species Zea mays
transcript GRMZM2G165351_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165351_T04 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os06g51430.1 (Oryza sativa), 3'ss of exon 8
gtgagtgtgacca--------tctgtagtattc--gatgcctcccatttta----gctgtggcatcaactgat-tcgagactttgcacgttcagGGTATTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTCAAG
||| |||  || |         ||||||||||    |||  | | | | ||     |||   |||||| |||  ||  | ||||| |   ||||||||||||| ||||| |||| || ||||||||||| ||||||||||||||||||
gtgcgtgcaactagctgtagacctgtagtattttaaatgagttctaatgtaaccaactgctacatcaattgacatcagggctttgtattgtcagGGTATTGCACTGATAATTACTGTTATCCAAATTGTTAGAGTACCTAACCTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67025992|gb|CO454741.1|CO454741
EST:     GGGCTGTTTTTCGCCAGCTCCCCTTTGCTTGGATTGGGCAAGACATTCTG                         GGTATTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTC
genomic: GGGCTGTTTTTCGCCAGCTCCCCTTTGCTTGGATTGGGCAAGACATTCTGgtgagtgtga ... gcacgttcagGGTATTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTC
EST: gi|67024697|gb|CO453446.1|CO453446
EST:     GGGCTGTTTTTCGCCAGCTCCCCTTTGCTTGGATTGGGCAAGACATTCTG                         GGTATTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTC
genomic: GGGCTGTTTTTCGCCAGCTCCCCTTTGCTTGGATTGGGCAAGACATTCTGgtgagtgtga ... gcacgttcagGGTATTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTC
EST: gi|67017568|gb|CO446317.1|CO446317
EST:     GGGCTGTTTTTCGCCAGCTCCCCTTTGCTTGGATTGGGCAAGACATTCTG                         GGTATTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTC
genomic: GGGCTGTTTTTCGCCAGCTCCCCTTTGCTTGGATTGGGCAAGACATTCTGgtgagtgtga ... gcacgttcagGGTATTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatgcctcccattttagctgtggcatcaactgattcgagactttgcacgttcagGGTATTGCATTGATAGTTACAGTCATCCAAATTGTGAGAGTACCTAACCTCAAG
                            aactgat  putative branch site (score: 3)
           atttta  TA-rich tract