1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gactttagtttaagggcaggcacataaatttcaccactgtcaattattgcttgtttgacattttgggggtaacagactaatataatatcgaacactatagGCTATGGTTGCCAGGGGTGACCTTGGAGCCGAGCTGCCCATTGAGGAGGTGCCGCTGTTGCAG
species | Zea mays |
transcript | GRMZM2G152686_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGCAGNCTCCATCCCCAACTTACATTCAATCATCACAGCATCTGATGGG GCTATGGTTGCCAGGGGTGACCTTGGAGCTGAGCTGCCCATTGAGGAGGTGEST: gi|213173762|gb|FM184221.1|FM184221
genomic: GTGCAGACTCCATCCCCAACTTACATTCAATCATCACAGCATCTGATGGGgtaaaaaata ... aacactatagGCTATGGTTGCCAGGGGTGACCTTGGAGCCGAGCTGCCCATTGAGGAGGTG
EST: GCAGACTCCATCCCCAACTTACATTCAATCATCACAGCATCTGATGGG GCTATGGTTGCCAGGGGTGACCTTGGAGCTGAGCTGCCCATTGAGGAGGTGEST: gi|14204276|gb|BG837953.1|BG837953
genomic: GCAGACTCCATCCCCAACTTACATTCAATCATCACAGCATCTGATGGGgtaaaaaata ... aacactatagGCTATGGTTGCCAGGGGTGACCTTGGAGCCGAGCTGCCCATTGAGGAGGTG
EST: TGCAGACTCCATCCCCAACTTACATTCAATCATCACCAGCATCTGATGGG GCTATKGTTGCCAGGGGTGMCCTTGGAGCCGAGCTGCCCATTGAGGAGGTGEST: gi|211141481|gb|FL154590.1|FL154590
genomic: TGCAGACTCCATCCCCAACTTACATTCAATCATCA-CAGCATCTGATGGGgtaaaaaata ... aacactatagGCTATGGTTGCCAGGGGTGACCTTGGAGCCGAGCTGCCCATTGAGGAGGTG
EST: GTGCAGACTCCATCCCCAACTTACATTCAATCATCACAGCATCTGATGGG GCTATGGTTGCCAGGGGTGACCTTGGAGCTGAGCTGCCCATTGAGGAGGTGEST: gi|67025561|gb|CO454310.1|CO454310
genomic: GTGCAGACTCCATCCCCAACTTACATTCAATCATCACAGCATCTGATGGGgtaaaaaata ... aacactatagGCTATGGTTGCCAGGGGTGACCTTGGAGCCGAGCTGCCCATTGAGGAGGTG
EST: GTGCAGACTCCATCCCCAACTTACATTCAATCATCACAGCATCTGATGGG GCTATGGTTGCCAGGGGTGACCTTGGAGCTGAGCTGCCCATTGAGNGAG-T
genomic: GTGCAGACTCCATCCCCAACTTACATTCAATCATCACAGCATCTGATGGGgtaaaaaata ... aacactatagGCTATGGTTGCCAGGGGTGACCTTGGAGCCGAGCTGCCCATTGAG-GAGGT
attgcttgtttgacattttgggggtaacagactaatataatatcgaacactatagGCTATGGTTGCCAGGGGTGACCTTGGAGCCGAGCTGCCCATTGAGGAGGTGCCGCTGTTGCAG
gactaat putative branch site (score: 190)
agactaatataatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gactttagtttaagggcaggcacataaatttcaccactgtcaattattgcttgtttgacattttgggggtaacagactaatataatatcgaacactatagGCTATGGTTGCCAGGGGTGACCTTGGAGCCGAGCTGCCCATTGAGGAGGTGCCGCTGTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - -gcaggca
- - - - - - - - - - - - - - - -caccact