1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ccatgcgattcatgatatctagctcaacccatgctttagaggtcacaaaatcttcttttaattattctaattcagtaattctaccttttttgcatcccagATTTGAAACTGTTGACATGGCAGTGAGGTTGCTTGTACCTATTATTGTGCTACAGAACCACAATAGGTACAACATTCTTCAAGAAGGCCATAACTATAGT
species | Zea mays |
transcript | GRMZM2G135968_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGAGGTGCAATTGCAACTACCATTGAGCATGTGATAGCTCCTGATATAAG ATTTGAAACTGTTGACATGGCAGTGAGGTTGCTTGTACCTATTATTGTGCTEST: gi|211229459|gb|FL255895.1|FL255895
genomic: GGAGGTGCAATTGCAACTACCATTGAGCATGTGATAGCTCCTGATATAAGgtattttcag ... tgcatcccagATTTGAAACTGTTGACATGGCAGTGAGGTTGCTTGTACCTATTATTGTGCT
EST: GGAGGTGCAATTGCAACTACCATTGAGCATGTGATAGCTCCTGATATAAG ATTTGAAACTGEST: gi|32823269|gb|CD962991.1|CD962991
genomic: GGAGGTGCAATTGCAACTACCATTGAGCATGTGATAGCTCCTGATATAAGgtattttcag ... tgcatcccagATTTGAAACTG
EST: GGAGGTGCAATTGCAACTACCATTGAGCATGTGATAGCTCCTGATATAAG ATTTGAAACTGTTGACATGGCAGTGAGGTTGCTTGTACCTATTATTGTGCTEST: gi|211229462|gb|FL255898.1|FL255898
genomic: GGAGGTGCAATTGCAACTACCATTGAGCATGTGATAGCTCCTGATATAAGgtattttcag ... tgcatcccagATTTGAAACTGTTGACATGGCAGTGAGGTTGCTTGTACCTATTATTGTGCT
EST: GGAGGTGCAATTGCAACTACCATTGACCATGTGATAGCTCCTGATATAAG ATTTGAAACTGTTGACATGGCAGTGAGGTTGCTTGTACCTATTATTGTGCT
genomic: GGAGGTGCAATTGCAACTACCATTGAGCATGTGATAGCTCCTGATATAAGgtattttcag ... tgcatcccagATTTGAAACTGTTGACATGGCAGTGAGGTTGCTTGTACCTATTATTGTGCT
caaaatcttcttttaattattctaattcagtaattctaccttttttgcatcccagATTTGAAACTGTTGACATGGCAGTGAGGTTGCTTGTACCTATTATTGTGCTACAGAACCACAATAGGTACAACATTCTTCAAGAAGGCCATAACTATAGT
ttctaat putative branch site (score: 154)
ttctaccttttttgc putative PPT
ttcttttaattattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatgcgattcatgatatctagctcaacccatgctttagaggtcacaaaatcttcttttaattattctaattcagtaattctaccttttttgcatcccagATTTGAAACTGTTGACATGGCAGTGAGGTTGCTTGTACCTATTATTGTGCTACAGAACCACAATAGGTACAACATTCTTCAAGAAGGCCATAACTATAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
ccatgcg
- - - -attcatg
- - - - - - - - - - - - - -cccatgc
- - - - - - - - - - - - - - - - - - - - - tcacaaa