1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtcaatgaattcaagcttgttttgtatcatgtcatttcacaaaaaaactgattgccggcaatttcttctacaattatcagttatttcctactgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTCAAGAGACCAGAGAACTGGGCACTAG
species | Zea mays |
transcript | GRMZM2G135132_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAG GTCATTGATTGCAAATCTGTCGGCNGCAAACTGGTACAAATCTGAGCATCTEST: gi|211433558|gb|FL254734.1|FL254734
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
EST: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAG GTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTEST: gi|211430963|gb|FL254725.1|FL254725
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
EST: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAG GTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTEST: gi|211535004|gb|FL000873.1|FL000873
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
EST: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAG GTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTEST: gi|87155643|gb|DY400432.1|DY400432
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
EST: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAGAG GTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTEST: gi|211535005|gb|FL000874.1|FL000874
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
EST: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAG GTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTEST: gi|211430956|gb|FL254718.1|FL254718
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
EST: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAG GTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTEST: gi|211433550|gb|FL254726.1|FL254726
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
EST: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGATGGTGGCGAAAG GTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTEST: gi|211430955|gb|FL254717.1|FL254717
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
EST: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAG GTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTEST: gi|26559465|gb|CA831700.1|CA831700
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
EST: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAGAG GTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTEST: gi|32916313|gb|CF021125.1|CF021125
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
EST: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGTGAAAG GTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTEST: gi|211430957|gb|FL254719.1|FL254719
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
EST: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAG GTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTEST: gi|22546548|gb|BU098859.1|BU098859
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
EST: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAGAG GTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTEST: gi|211430954|gb|FL254716.1|FL254716
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
EST: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAG GTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTEST: gi|211433557|gb|FL254733.1|FL254733
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
EST: AGACTGCTCCTACTGGCACATGTGCNTGTATGTGTTGTTGGTGGCGAAAG GTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCTTCCEST: gi|31353988|gb|CD438345.1|CD438345
genomic: AGACTGCTCCTACTGGCACATGTGC-TGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATC-
EST: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAG GTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTEST: gi|60395531|gb|DN228401.1|DN228401
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
EST: GTGCTGTATGTGTTGTTGGTGGCGAAAG GTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTEST: gi|211538002|gb|FL000876.1|FL000876
genomic: GTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
EST: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAG GTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
genomic: GAGACTGCTCCTACTGGCACATGTGCTGTATGTGTTGTTGGTGGCGAAAGgtttgttgtc ... ctgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCT
aactgattgccggcaatttcttctacaattatcagttatttcctactgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTCAAGAGACCAGAGAACTGGGCACTAG
aactgat putative branch site (score: 267)
tttcctact putative PPT
aattatcagttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaatgaattcaagcttgttttgtatcatgtcatttcacaaaaaaactgattgccggcaatttcttctacaattatcagttatttcctactgtaaccagGTCATTGATTGCAAATCTGTCGGCGGCAAACTGTTACAAATCTGAGCATCTCAAGAGACCAGAGAACTGGGCACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - -tgttttg
- - - - - - - - - - - - - -catgtca
- - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - tgattgc