1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtctgtaatgctaactttagaaccacttttacgtcaaacagattttgtagttataaacttcttgcagtctgatgagttaattaacgattatggttgttgacttttcagGTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAGGGCCTGCTG
species | Zea mays |
transcript | GRMZM2G133359_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAG GTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAGEST: gi|32909943|gb|CF014755.1|CF014755
genomic: CCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAGgtctgtaatg ... gacttttcagGTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAG
EST: GTTACATTCCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAG GTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAGEST: gi|16925875|gb|BM078943.1|BM078943
genomic: GTTACATTCCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAGgtctgtaatg ... gacttttcagGTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAG
EST: TCCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAG GTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAGEST: gi|88748683|gb|DY532824.1|DY532824
genomic: TCCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAGgtctgtaatg ... gacttttcagGTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAG
EST: GTTACATTCCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAG GTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAG
genomic: GTTACATTCCAAGTATATTAGATGTGCAGTTGATTGATGAGGTTGTGAAGgtctgtaatg ... gacttttcagGTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAG
taaacttcttgcagtctgatgagttaattaacgattatggttgttgacttttcagGTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAGGGCCTGCTG
cttttc CT-rich tract
ttaattaacgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtaatgctaactttagaaccacttttacgtcaaacagattttgtagttataaacttcttgcagtctgatgagttaattaacgattatggttgttgacttttcagGTTAGCACAGCAGAAGCCGTTGATTCTGCAAGGGAACTTGCTCTAAAAGAGGGCCTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG