1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tacaccaggcctgcacttccaaaatttgatatgcatatatcatcctaaaacctttggtttcttatatgtttcccctaagctttgtcttctcttatgttagTCCATCTTCAGTTTCAATGGTGCCGATGTATCTGGCTTTGATTCATTTCGTAAAGATTTTCCGGATCATAAAGAG
species | Zea mays |
transcript | GRMZM2G121427_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGATTCTAGCTTCCCACAATCATATAACTATTGTCGGTGATGAAGATCAG TCCATCTTCAGTTTCAATGGTGCCGATGTATCTGGCTTTGATTCATTTCGTEST: gi|88758498|gb|DY542867.1|DY542867
genomic: AGATTCTAGCTTCCCACAATCATATAACTATTGTCGGTGATGAAGATCAGgtacacagat ... cttatgttagTCCATCTTCAGTTTCAATGGTGCCGATGTATCTGGCTTTGATTCATTTCGT
EST: AGATTCTAGCTTCCCACAATCATATAACTATTGTCGGTGATGAAGATCAG TCCATCTTCAGTTTCAATGGTGCCGATGTATCTGGCTTTGATTCATTTCGTEST: gi|20802387|gb|BQ293437.1|BQ293437
genomic: AGATTCTAGCTTCCCACAATCATATAACTATTGTCGGTGATGAAGATCAGgtacacagat ... cttatgttagTCCATCTTCAGTTTCAATGGTGCCGATGTATCTGGCTTTGATTCATTTCGT
EST: TATTGTCGGTGATGAAGATCAG TCCATCTTCAGTTTCAATGGTGCCGATGTATCTGGCTTTGATTCATTTCGTEST: gi|18053134|gb|BM318792.1|BM318792
genomic: TATTGTCGGTGATGAAGATCAGgtacacagat ... cttatgttagTCCATCTTCAGTTTCAATGGTGCCGATGTATCTGGCTTTGATTCATTTCGT
EST: AGATTCTAGCTTCCCACAATCATATAACTATTGTCGGTGATGAAGATCAG TCCATCTTCAGTTTCAATGGTGCCGATGTATCTGGCTTTGATTCATTTCGTEST: gi|78545014|gb|DV622512.1|DV622512
genomic: AGATTCTAGCTTCCCACAATCATATAACTATTGTCGGTGATGAAGATCAGgtacacagat ... cttatgttagTCCATCTTCAGTTTCAATGGTGCCGATGTATCTGGCTTTGATTCATTTCGT
EST: AGATTCTAGCTTCCCACAATCATATAACTATTGTCGGTGATGAAGATCAG TCCATCTTCAGTTTCAATGGTGCCGATGTATCTGGCTTTGATTCATTTCGT
genomic: AGATTCTAGCTTCCCACAATCATATAACTATTGTCGGTGATGAAGATCAGgtacacagat ... cttatgttagTCCATCTTCAGTTTCAATGGTGCCGATGTATCTGGCTTTGATTCATTTCGT
taaaacctttggtttcttatatgtttcccctaagctttgtcttctcttatgttagTCCATCTTCAGTTTCAATGGTGCCGATGTATCTGGCTTTGATTCATTTCGTAAAGATTTTCCGGATCATAAAGAG
tcctaaa putative branch site (score: 2)
ctttgtcttctcttat putative PPT
tttcttatatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaccaggcctgcacttccaaaatttgatatgcatatatcatcctaaaacctttggtttcttatatgtttcccctaagctttgtcttctcttatgttagTCCATCTTCAGTTTCAATGGTGCCGATGTATCTGGCTTTGATTCATTTCGTAAAGATTTTCCGGATCATAAAGAG
tacacca
- - - - gcctgca
- - - - - - - - - - - - - - - atgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtttc