1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttttggagatgatcaatgtcctaatgtatgttatatcttgtagttgctcctacattgcgttatggaatgttttttctgagtgccattttttttactacagGCTGGAGTTTTGTCTGGTGATGTTAGCGACATTGTCCTTCTCGATGTGACCCCATTGTCCCTTGGTTTGGAGACACTGGGTGGTGTTATGACCAAGATTA
species | Zea mays |
transcript | GRMZM2G111475_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGTGACAGTCAACCCTGATGAGGTTGTTGCACTTGGAGCAGCTGTGCAG GCTGGGGGTTTGTCTGGTGATGTTAGCGACATTGTCCTT-TCTGATGTGACEST: gi|13490628|gb|BG517392.1|BG517392
genomic: ATGTGACAGTCAACCCTGATGAGGTTGTTGCACTTGGAGCAGCTGTGCAGgtcagttcac ... tttactacagGCTGGAGTTTTGTCTGGTGATGTTAGCGACATTGTCCTTCTC-GATGTGAC
EST: ATGTGACAGTCAACCCTGATGAGGTTGTTGCACTTGGAGCAGCTGTGCAG GCTGGAGTTTTGTCTGGTGATGTTAGCGACATTGTCCTTCTCGATGTGACCEST: gi|67028777|gb|CO457526.1|CO457526
genomic: ATGTGACAGTCAACCCTGATGAGGTTGTTGCACTTGGAGCAGCTGTGCAGgtcagttcac ... tttactacagGCTGGAGTTTTGTCTGGTGATGTTAGCGACATTGTCCTTCTCGATGTGACC
EST: ATGTGACAGTCAACCCTGATGAGGTTGTTGCACTTGGAGCAGCTGTGCAG GCTGGAGTTTTGTCTGGTGATGTTAGCGACATTGTCCTTCTTGATGTGACC
genomic: ATGTGACAGTCAACCCTGATGAGGTTGTTGCACTTGGAGCAGCTGTGCAGgtcagttcac ... tttactacagGCTGGAGTTTTGTCTGGTGATGTTAGCGACATTGTCCTTCTCGATGTGACC
gctcctacattgcgttatggaatgttttttctgagtgccattttttttactacagGCTGGAGTTTTGTCTGGTGATGTTAGCGACATTGTCCTTCTCGATGTGACCCCATTGTCCCTTGGTTTGGAGACACTGGGTGGTGTTATGACCAAGATTA
ccattttttttact CT-rich tract
attttttttactaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttggagatgatcaatgtcctaatgtatgttatatcttgtagttgctcctacattgcgttatggaatgttttttctgagtgccattttttttactacagGCTGGAGTTTTGTCTGGTGATGTTAGCGACATTGTCCTTCTCGATGTGACCCCATTGTCCCTTGGTTTGGAGACACTGGGTGGTGTTATGACCAAGATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - -atgtatg
- - - - - - - - - - - - - - - - - - - - - - tgctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccatt