1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaaggcatgatatttttaggttcgtctttcttgtgcgtagtatgggggaacctaatgcatctatgctttgtagGGAACTACTGTTGCAGCTGGTAATACTGATGGCAAGCCCTCTGAAGGCAAAGATAAAAGTCCAACAAAGCGATCCAAAGGAAGTTTGGGCAGCTTGAACA
species | Zea mays |
transcript | GRMZM2G088140_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATTTACTCCTTATGCCATTACTTCTCCAAATGGCAATGCTGATGCTACT GGAACTACTGTTGCAGCTGGTAATACTGATGGCAAGCCCTCTGAAGGCAAAEST: gi|211355418|gb|FL036286.1|FL036286
genomic: CATTTACTCCTTATGCCATTACTTCTCCAAATGGCAATGCTGATGCTACTgtaaggcatg ... tgctttgtagGGAACTACTGTTGCAGCTGGTAATACTGATGGCAAGCCCTCTGAAGGCAAA
EST: CATTTACTCCTTATGCCATTACTTCTCCAAATGGCAATGCTGATGCTACT GGAACTACTGTTGEST: gi|71442579|gb|DR823629.1|DR823629
genomic: CATTTACTCCTTATGCCATTACTTCTCCAAATGGCAATGCTGATGCTACTgtaaggcatg ... tgctttgtagGGAACTACTGTTG
EST: CATTTACTCCTTATGCCATTACTTCTCCAAATGGCAATGCTGATGCTACT GGAACTACTGTTGCAGCTGGTAATACTGATGGCAAGCCCTCTGAAGGCAAA
genomic: CATTTACTCCTTATGCCATTACTTCTCCAAATGGCAATGCTGATGCTACTgtaaggcatg ... tgctttgtagGGAACTACTGTTGCAGCTGGTAATACTGATGGCAAGCCCTCTGAAGGCAAA
ggttcgtctttcttgtgcgtagtatgggggaacctaatgcatctatgctttgtagGGAACTACTGTTGCAGCTGGTAATACTGATGGCAAGCCCTCTGAAGGCAAAGATAAAAGTCCAACAAAGCGATCCAAAGGAAGTTTGGGCAGCTTGAACA
acctaat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggcatgatatttttaggttcgtctttcttgtgcgtagtatgggggaacctaatgcatctatgctttgtagGGAACTACTGTTGCAGCTGGTAATACTGATGGCAAGCCCTCTGAAGGCAAAGATAAAAGTCCAACAAAGCGATCCAAAGGAAGTTTGGGCAGCTTGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT