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gtaagtttcaacataattgtggcagcatattttttactgatactccctcgcctccttaaattgtctctgctgcttcgttgataaaattacaaaaaaaaataacttttaatttgtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGGAACAAGCGGGTCACTTGATGGGCAGCAAAGGTTGGTGATCAAAGGAAGA
species | Zea mays |
transcript | GRMZM2G080048_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTTTTTGTTAACTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGGEST: gi|60399446|gb|DN232258.1|DN232258
genomic: AGTTTTTGTTAACTTTATGGATTTGTGTAAAACgtaagtttca ... gtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGG
EST: GGGAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGGEST: gi|211375010|gb|FL430791.1|FL430791
genomic: GGGAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAACgtaagtttca ... gtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGG
EST: GAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGGEST: gi|60354326|gb|DN221299.1|DN221299
genomic: GAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAACgtaagtttca ... gtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGG
EST: GAGGGAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGGEST: gi|94473773|gb|EB702731.1|EB702731
genomic: GAGGGAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAACgtaagtttca ... gtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGG
EST: GAGGGAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGGEST: gi|32863955|gb|CF003637.1|CF003637
genomic: GAGGGAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAACgtaagtttca ... gtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGG
EST: GGGAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGGEST: gi|26455990|gb|CA827573.1|CA827573
genomic: GGGAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAACgtaagtttca ... gtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGG
EST: GAGGGAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGGEST: gi|6194479|gb|AW146583.1|AW146583
genomic: GAGGGAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAACgtaagtttca ... gtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGG
EST: GAGGGAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGGEST: gi|60357822|gb|DN224795.1|DN224795
genomic: GAGGGAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAACgtaagtttca ... gtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGG
EST: TAACTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGGEST: gi|19822348|gb|BQ048372.1|BQ048372
genomic: TAACTTTATGGATTTGTGTAAAACgtaagtttca ... gtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGG
EST: GAGGGAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGGEST: gi|60395435|gb|DN228305.1|DN228305
genomic: GAGGGAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAACgtaagtttca ... gtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGG
EST: AGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGGEST: gi|32863956|gb|CF003638.1|CF003638
genomic: AGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAACgtaagtttca ... gtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGG
EST: GGGAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGGEST: gi|14191391|gb|BG833621.1|BG833621
genomic: GGGAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAACgtaagtttca ... gtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGG
EST: GGGAACAAAGAAGACAGTGTTGTTGTTAATTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGGEST: gi|211047495|gb|FL474402.1|FL474402
genomic: GGGAACAAAGAAGACAGT-TT-TTGTTAACTTTATGGATTTGTGTAAAACgtaagtttca ... gtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGG
EST: TTTTGTTAACTTTATGGATTTGTGTAAAAC GATGCATAAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGEST: gi|60347700|gb|DN214673.1|DN214673
genomic: TTTTGTTAACTTTATGGATTTGTGTAAAACgtaagtttca ... gtatctccagGATGCAT-AGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGG
EST: TTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGGEST: gi|60398984|gb|DN231800.1|DN231800
genomic: TTTATGGATTTGTGTAAAACgtaagtttca ... gtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGG
EST: GAGGG-ACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAAC GATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGG
genomic: GAGGGAACAAAGAAGACAGTTTTTGTTAACTTTATGGATTTGTGTAAAACgtaagtttca ... gtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGG
tgctgcttcgttgataaaattacaaaaaaaaataacttttaatttgtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGGAACAAGCGGGTCACTTGATGGGCAGCAAAGGTTGGTGATCAAAGGAAGA
tatctcc CT-rich tract
ttgataaaattacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttcaacataattgtggcagcatattttttactgatactccctcgcctccttaaattgtctctgctgcttcgttgataaaattacaaaaaaaaataacttttaatttgtatctccagGATGCATAGGCAACCTGAGCATGTGATGATGTTTTTACTTGCTGAAATGGGAACAAGCGGGTCACTTGATGGGCAGCAAAGGTTGGTGATCAAAGGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA