1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ttcttatctagcttttgtgttattgattattggtagcaccatgtgatggttatctagagggacctaggctaatggtttcttgggcctatatatttcacagTTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAG
species | Zea mays |
transcript | GRMZM2G079468_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTACGATCCCCACCATAACCTTCTCTGTGTGGTATCTGGTCGCAAAAAAG TTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGTEST: gi|76289273|gb|DV028841.1|DV028841
genomic: TTACGATCCCCACCATAACCTTCTCTGTGTGGTATCTGGTCGCAAAAAAGgtccgtatgt ... tatttcacagTTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGT
EST: TTACGATCCCCACCATAACCTTCTCTGTGTGGTATCTGGTCGCAAAAAAG TTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGTEST: gi|148934464|gb|EC878503.2|EC878503
genomic: TTACGATCCCCACCATAACCTTCTCTGTGTGGTATCTGGTCGCAAAAAAGgtccgtatgt ... tatttcacagTTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGT
EST: TTACGATCCCCACCATAACCTTCTCTGTGTGGTATCTGGTCGCAAAAAAG TTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGTEST: gi|74240416|gb|DT648330.1|DT648330
genomic: TTACGATCCCCACCATAACCTTCTCTGTGTGGTATCTGGTCGCAAAAAAGgtccgtatgt ... tatttcacagTTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGT
EST: TTACGATCCCCACCATAACCTTCTCTGTGTGGTATCTGGTCGCAAAAAAG TTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGT
genomic: TTACGATCCCCACCATAACCTTCTCTGTGTGGTATCTGGTCGCAAAAAAGgtccgtatgt ... tatttcacagTTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGT
atggttatctagagggacctaggctaatggtttcttgggcctatatatttcacagTTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAG
ggctaat putative branch site (score: 18)
tatatatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttatctagcttttgtgttattgattattggtagcaccatgtgatggttatctagagggacctaggctaatggtttcttgggcctatatatttcacagTTACTTTGTGGCCTCCATCTGCATCCCCATTCTTATACCCGTTGCCTGTGTATGGCGAGGCCTCCAACCACAG
- - - - - gcttttg
- - - - - - - - - - - - - - - - gtagcac
- - - - - - - - - - - - - - - - - - - - -tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctaatg