1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacaagcttatgctttcatcagattgctatattgttgctttgatttccgtatgcagtatctcatgtgttgctacctttacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCATTAAAGAGTAACCAATCACCCTGGGTAGGTCAATTTTTATCTGCAAGAA
species | Zea mays |
transcript | GRMZM2G064426_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCEST: gi|31664550|gb|CD573483.1|CD573483
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACC
EST: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCAAGAG GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCAEST: gi|463317|gb|T18284.1|T18284
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCAEST: gi|453328|gb|T15302.1|T15302
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCAEST: gi|33096563|gb|CF056557.1|CF056557
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG GCGGGTTTTTGGTCGCAGTTATTTACTA-GTAAGACACCTTGCGGTGACCAEST: gi|71311885|gb|DR792413.1|DR792413
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCAEST: gi|93017163|gb|EB642683.1|EB642683
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCAEST: gi|71446912|gb|DR827962.1|DR827962
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: CGGACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAN GCGGGTTTTTGGTCGCAGTTATTTAEST: gi|60397343|gb|DN230159.1|DN230159
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTA
EST: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCAEST: gi|71311886|gb|DR792414.1|DR792414
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCAEST: gi|453331|gb|T15305.1|T15305
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCAEST: gi|149102150|gb|EE287580.2|EE287580
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCAEST: gi|149102149|gb|EE188096.2|EE188096
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCAEST: gi|60344410|gb|DN211383.1|DN211383
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCAEST: gi|71315806|gb|DR794556.1|DR794556
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACCCCTTGCGGTGACCAEST: gi|149107729|gb|EE189603.2|EE189603
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCCTGCGGTGACCAEST: gi|71315807|gb|DR794557.1|DR794557
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
EST: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAG GCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
genomic: CGAACTAATGAAGACATGGACCTTTTCTGCAACAGCTGCTCTTCCCCGAGgtacaagctt ... tacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCA
tgttgctttgatttccgtatgcagtatctcatgtgttgctacctttacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCATTAAAGAGTAACCAATCACCCTGGGTAGGTCAATTTTTATCTGCAAGAA
ctttgat putative branch site (score: 5)
ctaccttt putative PPT
tttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaagcttatgctttcatcagattgctatattgttgctttgatttccgtatgcagtatctcatgtgttgctacctttacgatgcagGCGGGTTTTTGGTCGCAGTTATTTACTAAGTAAGACACCTTGCGGTGACCATTAAAGAGTAACCAATCACCCTGGGTAGGTCAATTTTTATCTGCAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA