1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagatgaagtcttttcttggattattacatgctttttgtttttttattttaaacagtcggtaaaaggattcactcatgtagTTGCTTCACTGCACTCTATGCTCCGAATCCCATCGTAAGCATATTCGTGGATGTCTGCATGACATATGGAAGGGTCTGTCGATGAGGACGGCAACAGGTC
species | Zea mays |
transcript | GRMZM2G048553_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGAGTGATGAGGACCTAAGTGAAGAAGACAACAGGGAGGTCGATGATGAG TTGCTTCACTGCACTCTATGCTCCGAATCCCATCGTAAGCATATTCGTGGAEST: gi|211305952|gb|FL325095.1|FL325095
genomic: GGAGTGATGAGGACCTAAGTGAAGAAGACAACAGGGAGGTCGATGATGAGgtgagatgaa ... actcatgtagTTGCTTCACTGCACTCTATGCTCCGAATCCCATCGTAAGCATATTCGTGGA
EST: GAGTGATGAAGGACCTAAGTGAAGAAGACAACAGGGAGGTCGATGATGAG TTGCTTCACTGCACTC
genomic: GAGTGATGA-GGACCTAAGTGAAGAAGACAACAGGGAGGTCGATGATGAGgtgagatgaa ... actcatgtagTTGCTTCACTGCACTC
acatgctttttgtttttttattttaaacagtcggtaaaaggattcactcatgtagTTGCTTCACTGCACTCTATGCTCCGAATCCCATCGTAAGCATATTCGTGGATGTCTGCATGACATATGGAAGGGTCTGTCGATGAGGACGGCAACAGGTC
ttcactc CT-rich tract
tttttgtttttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatgaagtcttttcttggattattacatgctttttgtttttttattttaaacagtcggtaaaaggattcactcatgtagTTGCTTCACTGCACTCTATGCTCCGAATCCCATCGTAAGCATATTCGTGGATGTCTGCATGACATATGGAAGGGTCTGTCGATGAGGACGGCAACAGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG