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gtaggtggcaccgtggcacacttttattggttctttaatctggaattttaaatatcaaattatcaatgatctaaccttaagctgcttcttgtttttgacattctttctcatatcttatctctaagactgttgcctaacctgtgacatgcagAGCCAGGTGTTCCGTTTCTTGAAGATGCTGAAAGAGAAAGGGAAAAAGCTATTTCTTCTTACTAATTCGCCTTTCTACTTTGTAGATGGAGGGATGCGTT
species | Zea mays |
transcript | GRMZM2G040945_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAATTCACAGGCAAATTCTTTCCGAGCCTGAGAAATTTCTGATNNNNNNN NGCCAGGTGTTCCGTTTCTTGAAGATGCTGAAAGAGAEST: gi|78103885|gb|DV522308.1|DV522308
genomic: TAATTCACAGGCAAATTCTTTCCGAGCCTGAGAAATTTCTGATAAAAAAAgtaggtggca ... tgacatgcagAGCCAGGTGTTCCGTTTCTTGAAGATGCTGAAAGAGA
EST: TAATTCACAGGCAAATTCTTTCCGAGCCTGAGAAATTTCTGATNNNNNNN NGTTAGGTGTTCCGTTTCTTGAAGATGCTGAAAGAGAAAGGGAAAAAGCTAEST: gi|71417284|gb|DR803998.1|DR803998
genomic: TAATTCACAGGCAAATTCTTTCCGAGCCTGAGAAATTTCTGATAAAAAAAgtaggtggca ... tgacatgcagAGCCAGGTGTTCCGTTTCTTGAAGATGCTGAAAGAGAAAGGGAAAAAGCTA
EST: TAATTCACAGGCAAATTCTTTCCGAGCCTGAGAAATTTCTGATNNNNNNN NGCCAGGTGTTCCGTTTCTTGAAGATGCTGAAAGAGAAAGGGAAAA-GCTAEST: gi|94475337|gb|EB704295.1|EB704295
genomic: TAATTCACAGGCAAATTCTTTCCGAGCCTGAGAAATTTCTGATAAAAAAAgtaggtggca ... tgacatgcagAGCCAGGTGTTCCGTTTCTTGAAGATGCTGAAAGAGAAAGGGAAAAAGCTA
EST: TAATTCACAGGCAAATTCTTTCCGAGCCTGAGAAATTTCTGATNNNNNNN NGCCAGGTGTTCCGTTTCTTGAAGATGCTGAAAGAGAAAGGGAAAAAGCTA
genomic: TAATTCACAGGCAAATTCTTTCCGAGCCTGAGAAATTTCTGATAAAAAAAgtaggtggca ... tgacatgcagAGCCAGGTGTTCCGTTTCTTGAAGATGCTGAAAGAGAAAGGGAAAAAGCTA
gacattctttctcatatcttatctctaagactgttgcctaacctgtgacatgcagAGCCAGGTGTTCCGTTTCTTGAAGATGCTGAAAGAGAAAGGGAAAAAGCTATTTCTTCTTACTAATTCGCCTTTCTACTTTGTAGATGGAGGGATGCGTT
gcctaac putative branch site (score: 122)
atatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtggcaccgtggcacacttttattggttctttaatctggaattttaaatatcaaattatcaatgatctaaccttaagctgcttcttgtttttgacattctttctcatatcttatctctaagactgttgcctaacctgtgacatgcagAGCCAGGTGTTCCGTTTCTTGAAGATGCTGAAAGAGAAAGGGAAAAAGCTATTTCTTCTTACTAATTCGCCTTTCTACTTTGTAGATGGAGGGATGCGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG