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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggttctattctatcggtaatcccttgccctacatgttagccatggtagttattggccttggccaatgtgtaacagaagagcaccaccatgtacttgcagATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCGGTTGATTATGGGTCTGTAACTTTGGAACAG

Basic information

species Zea mays
transcript GRMZM2G036861_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G036861_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os03g14990.1 (Oryza sativa), 3'ss of exon 6
gtgcggttctattctatcggtaatcccttgccctacatgtt--agccatggtagttattggccttggccaatgtgtaacagaagagcaccaccatgtacttgcagATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCGGTTGATTATGGGTCTGTAACTTTGGAACAG
|     |        ||  | |    | | |   | ||| |  |||||||  |   |||     || ||||||| | | || ||   |  |   |  | |||||||||||| ||||||| ||||| |||||||| ||||| || |||||||| || ||||||||||   |||||||  ||||||||
gaaaaatgaatcagcattcgaatatacatcctaaatatgctgaagccatgcaacaaatt----ctgtccaatgtctcatagcagcaaaatatttt-caattgcagATCTTGGCGTTTGTGTCCAAGGTGCATCAAGTTGTACTACCAGAAGATGCCGTTGATTATGACACTGTAACAATGGAACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148950436|gb|EC896004.2|EC896004
EST:     CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG                         ATCTTGTCGTTTGTTTCCAAAGTGCATTANGTTGTGCTCCCAGAAGACGCG
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... gtacttgcagATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCG
EST: gi|149096924|gb|EE182722.2|EE182722
EST:     CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG                         ATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCG
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... gtacttgcagATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCG
EST: gi|149088025|gb|EE177228.2|EE177228
EST:     CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG                         ATCTTGTCGTTTGTTTTCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCG
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... gtacttgcagATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCG
EST: gi|149089246|gb|EE178450.2|EE178450
EST:     CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG                         ATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCG
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... gtacttgcagATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCG
EST: gi|149106625|gb|EE188518.2|EE188518
EST:     CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG                         ATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCG
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... gtacttgcagATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCG
EST: gi|148951094|gb|EC896759.2|EC896759
EST:     CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG                         ATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCG
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... gtacttgcagATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCG
EST: gi|211106358|gb|FL258167.1|FL258167
EST:     TGCAGGGGCCCTCGCCAAAGAAA-TTCTTAAGCTCAAATGTGGAT-AGAG                         ATCTTGTCGTTTGTTTCCAAAGGGCATCAAGTTTGGGCTCCCA
genomic: TGCAGGGGCCCTCGCCAA-GAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... gtacttgcagATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTT-GTGCTCCCA
EST: gi|76281790|gb|DV021358.1|DV021358
EST:     CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGGGGATTAGAG                         ATCCTGTCGTTTGTTTCCAA-GTGCAT
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... gtacttgcagATCTTGTCGTTTGTTTCCAAAGTGCAT
EST: gi|149067437|gb|EE287007.2|EE287007
EST:     CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG                         ATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCG
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... gtacttgcagATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCG
EST: gi|149098825|gb|EE184838.2|EE184838
EST:     CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG                         ATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCG
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... gtacttgcagATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCG
EST: gi|149071022|gb|EE159425.2|EE159425
EST:     CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAG                         ATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCG
genomic: CTGCAGGGGCCCTCGCCAAGAAAATTCTTAAGCTCAAATGTGGATTAGAGgtgcggttct ... gtacttgcagATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagttattggccttggccaatgtgtaacagaagagcaccaccatgtacttgcagATCTTGTCGTTTGTTTCCAAAGTGCATCAGGTTGTGCTCCCAGAAGACGCGGTTGATTATGGGTCTGTAACTTTGGAACAG
                      gtgtaac  putative branch site (score: 3)