Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggatactgctctttcttttgctatcattccatctcatattctgctacaatattgtcttaacactagtgttctttcttctatgtgcagGCACAAGACTTTCAGGATCCTGAGATTCATCACAGACATGTGTCTCACTTGTTTGGTCTTTATCCTGGACATACTATGTCACTTGAGGAAACACCTGACC

Basic information

species Zea mays
transcript GRMZM2G019673_T03
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67026471|gb|CO455220.1|CO455220
EST:     ATGAAAGTTGCTAGAGATGGCACAATCATGGAGTGG                         GCAC-AGACNTTTCAGGATCCTGAGATTCATCACAGACATGTGTCTCACTT
genomic: ATGAAAGTTGCTAGAGATGGCACAATCATGGAGTGGgtaagtggat ... ctatgtgcagGCACAAGAC-TTTCAGGATCCTGAGATTCATCACAGACATGTGTCTCACTT
EST: gi|67026461|gb|CO455210.1|CO455210
EST:     AAATTTCCCCCCAA-GAAAGTTGCTAGAGATGCCCCATTCATGGAGT-G                         GCCCAAGACTTTCAATAT-CTGGAG-TTCATCACAGACATGT-TCTCACCT
genomic: AAATCTCCCACCAATGAAAGTTGCTAGAGATGGCACAATCATGGAGTGGgtaagtggat ... ctatgtgcagGCACAAGACTTTCAGGATCCT-GAGATTCATCACAGACATGTGTCTCACTT
EST: gi|211427631|gb|FL452062.1|FL452062
EST:     CAAATCTCCCACCAATGAAAGTTGCTAGAGATGGCACAATCATGGAGTGG                         GCACAAGACTTTCAGGATCCTGAGATTCATCACAGACATGTGTCTCACTTG
genomic: CAAATCTCCCACCAATGAAAGTTGCTAGAGATGGCACAATCATGGAGTGGgtaagtggat ... ctatgtgcagGCACAAGACTTTCAGGATCCTGAGATTCATCACAGACATGTGTCTCACTTG
EST: gi|78113504|gb|DV531895.1|DV531895
EST:     CAAATCTCCCACCAATGAAAGTTGCTAGAGATGGCACAATCATGGAGTGG                         GCACAAGACTTTCAGGATCCTGAGATTCATCACAGACATGTGTCTCACTTG
genomic: CAAATCTCCCACCAATGAAAGTTGCTAGAGATGGCACAATCATGGAGTGGgtaagtggat ... ctatgtgcagGCACAAGACTTTCAGGATCCTGAGATTCATCACAGACATGTGTCTCACTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcatattctgctacaatattgtcttaacactagtgttctttcttctatgtgcagGCACAAGACTTTCAGGATCCTGAGATTCATCACAGACATGTGTCTCACTTGTTTGGTCTTTATCCTGGACATACTATGTCACTTGAGGAAACACCTGACC
                      tcttaac  putative branch site (score: 2)
                                  tgttctttcttctat  putative PPT
            tacaatatt  TA-rich tract