1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agtaatttcctactcaattgaagtagctctcttttcattgcttagatgattcttttttctatacaaacgcaactgactagaacttcattgttctttacagCTGTTTGCTGATGCATTGGTAAAGAAAGCATACGATAACTGGATGTATGTCATTGAATATGATGGCAAAGGTCTTTTGAACCCTAAACCAAAGAAAAAGT
species | Zea mays |
transcript | GRMZM2G018837_T04 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTCTGGCGAGCAGTTTTATTCATCTGAGAGTCTTGATGATAGCCAAAAG CTGTTTGCTGATGCATTGGTAAAGAAAGCATACGATAACTGGATGTATGTCEST: gi|32835258|gb|CD974936.1|CD974936
genomic: TTTCTGGCGAGCAGTTTTATTCATCTGAGAGTCTTGATGATAGCCAAAAGgtcagtattg ... ttctttacagCTGTTTGCTGATGCATTGGTAAAGAAAGCATACGATAACTGGATGTATGTC
EST: TTTCTGGCGAGCAGTTTTATTCATCTGAGAGTCTTGATGATAGCCAAAAG CTGTTTGCTGATGCATTGGTAAAGAAAGCATACGATAACTGGATGTATGTCEST: gi|60339880|gb|DN206853.1|DN206853
genomic: TTTCTGGCGAGCAGTTTTATTCATCTGAGAGTCTTGATGATAGCCAAAAGgtcagtattg ... ttctttacagCTGTTTGCTGATGCATTGGTAAAGAAAGCATACGATAACTGGATGTATGTC
EST: TTTCTGGCGAGCAGTTTTATTCATCTGAGAGTCTTGATGATAGCCAAAAG CTGTTTGCTGATGCATTGGTAAAGAAAGCATACGATAACTGGATGTATGTCEST: gi|32833736|gb|CD973414.1|CD973414
genomic: TTTCTGGCGAGCAGTTTTATTCATCTGAGAGTCTTGATGATAGCCAAAAGgtcagtattg ... ttctttacagCTGTTTGCTGATGCATTGGTAAAGAAAGCATACGATAACTGGATGTATGTC
EST: TTTCTGGCGAGCAGTTTTATTCATCTGAGAGTCTTGATGATAGCCAAAAG CTGTTTGCTGATGCATTGGTAAAGAAAGCATACGATAACTGGATGTATGTCEST: gi|32835640|gb|CD975318.1|CD975318
genomic: TTTCTGGCGAGCAGTTTTATTCATCTGAGAGTCTTGATGATAGCCAAAAGgtcagtattg ... ttctttacagCTGTTTGCTGATGCATTGGTAAAGAAAGCATACGATAACTGGATGTATGTC
EST: TTTCTGGCGAGCAGTTTTATTCATCTGAGAGTCTTGATGATAGCCAAAAG CTGTTTGCTGATGCATTGGTAAAGAAAGCATACGATAACTGGATGTATGTC
genomic: TTTCTGGCGAGCAGTTTTATTCATCTGAGAGTCTTGATGATAGCCAAAAGgtcagtattg ... ttctttacagCTGTTTGCTGATGCATTGGTAAAGAAAGCATACGATAACTGGATGTATGTC
atgattcttttttctatacaaacgcaactgactagaacttcattgttctttacagCTGTTTGCTGATGCATTGGTAAAGAAAGCATACGATAACTGGATGTATGTCATTGAATATGATGGCAAAGGTCTTTTGAACCCTAAACCAAAGAAAAAGT
aactgac putative branch site (score: 2)
cttcattgttcttt putative PPT
ttttttctatacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtaatttcctactcaattgaagtagctctcttttcattgcttagatgattcttttttctatacaaacgcaactgactagaacttcattgttctttacagCTGTTTGCTGATGCATTGGTAAAGAAAGCATACGATAACTGGATGTATGTCATTGAATATGATGGCAAAGGTCTTTTGAACCCTAAACCAAAGAAAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA