1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgcctgtccattgccattgtgggatatgtgcattttccttctcctttacgtaagactccggacacaacgccattcctaatccaactgctatctgtttgcccctatcacctggacagAGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTGAGAGGCTGTTGGGCGACAAGATAGATGAAGTCGTCAAAGAATGGGATGT
species | Zea mays |
transcript | GRMZM2G017584_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAG AGGCAAGCCAACCTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTGEST: gi|50333059|gb|CO528185.1|CO528185
genomic: CAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAGgtgcctgtcc ... acctggacagAGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTG
EST: CAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAG AGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTGEST: gi|149088812|gb|EE177939.2|EE177939
genomic: CAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAGgtgcctgtcc ... acctggacagAGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTG
EST: CAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAG AGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTGEST: gi|148954015|gb|EC899413.2|EC899413
genomic: CAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAGgtgcctgtcc ... acctggacagAGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTG
EST: CAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAG AGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTGEST: gi|32165048|gb|CD670366.1|CD670366
genomic: CAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAGgtgcctgtcc ... acctggacagAGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTG
EST: CAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAG AGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTGEST: gi|30032130|gb|CB833981.1|CB833981
genomic: CAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAGgtgcctgtcc ... acctggacagAGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTG
EST: CAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAG AGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTGEST: gi|71326297|gb|DR799838.1|DR799838
genomic: CAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAGgtgcctgtcc ... acctggacagAGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTG
EST: CAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAG AGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTGEST: gi|31910411|gb|CD651410.1|CD651410
genomic: CAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAGgtgcctgtcc ... acctggacagAGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTG
EST: CAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAG AGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTG
genomic: CAAAAAATTGTCAAAGGAGTATGCAGAAGCAAAGGAACTGGCCCTTGCAGgtgcctgtcc ... acctggacagAGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTG
acacaacgccattcctaatccaactgctatctgtttgcccctatcacctggacagAGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTGAGAGGCTGTTGGGCGACAAGATAGATGAAGTCGTCAAAGAATGGGATGT
tcctaat putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcctgtccattgccattgtgggatatgtgcattttccttctcctttacgtaagactccggacacaacgccattcctaatccaactgctatctgtttgcccctatcacctggacagAGGCAAGCCAAACTGTCGAAGTTGAAGATGCTAAGCACCTCCTTCAGAGTGAGAGGCTGTTGGGCGACAAGATAGATGAAGTCGTCAAAGAATGGGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA