1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttggttaatttgtcatgttttctcttcatttttcacagaaagtatgcacaacctgttcatgtttacatgtagtgtgccttaatacattctattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAAACACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTG
species | Zea mays |
transcript | GRMZM2G003692_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAAEST: gi|113703640|gb|EE681144.1|EE681144
genomic: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAAEST: gi|6101980|gb|AW126450.1|AW126450
genomic: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAAEST: gi|37390564|gb|CF632514.1|CF632514
genomic: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: CCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAAEST: gi|31362808|gb|CD447165.1|CD447165
genomic: CCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAAEST: gi|6022668|gb|AW067596.1|AW067596
genomic: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAAEST: gi|211078663|gb|FL128724.1|FL128724
genomic: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: AATGGTTACTTTGCTTCTCTGCGATCTGAG TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAAEST: gi|78021266|gb|DV489653.1|DV489653
genomic: AATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAAEST: gi|71767908|gb|DR965845.1|DR965845
genomic: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAAEST: gi|60353742|gb|DN220715.1|DN220715
genomic: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
EST: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAG TTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
genomic: CTGCCTCCAAACATGCTCTTAATGGTTACTTTGCTTCTCTGCGATCTGAGgtacccgaaa ... tattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAA
tgcacaacctgttcatgtttacatgtagtgtgccttaatacattctattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAAACACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTG
ccttaat putative branch site (score: 4)
ttctatttt putative PPT
ttaatacattctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggttaatttgtcatgttttctcttcatttttcacagaaagtatgcacaacctgttcatgtttacatgtagtgtgccttaatacattctattttgcagTTGTGTACAAAAGGCATTAAGGTCACTGTTATCTGCCCTGGACCGATTGAAACACTACAATCTTCTGCTGCAGCTTCTTCATCGCAAACACATTCTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT