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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttattgttaaaattcatataaaccttctatctttcgttgtttaagatttttttatttcactacactggcttatcactattgtttcttgatttcacaaactggacatatgcagGGCCATTGTCCTTGCAGTAACAACACTCCTTGATTGGTGGATGTATGGTTCCTGGGTCATAGTGCCGCTTAATTTTTTGAAATTCAACTTATTGTCTTCC

Basic information

species Zea mays
transcript GRMZM2G000937_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000937_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g39810.4 (Oryza sativa), 3'ss of exon 2
gtaagttattgttaaaattcatataaaccttctatctttcgtt-gtttaagatttttttatttcactacactggcttatcactattgtttcttgat--ttcacaaactggacatatgcagGGCCATTGTCCTTGCAGTAACAACACTCCTTGATTGGTGGATGTATGGTTCCTGGGTCATAGTGCCGCTTAATTTTTTGAAATTCAACTTATTGTCTTCC
                  | ||  || | ||   | | | ||  | | | | ||| ||| | |||| |    ||  ||    |||      |  ||  ||   || |||    | ||||||| | |||||||||| || |||||  | |||||||| ||||||||||||||| || |||||||||| ||||||||||||||||| ||| | || ||||| 
----------------gatgattgaagcattgcttttcttgtaaggtcatgttttctttttctcacaattgaggaatacttttataaaccttacatgctttctaatctg----tctgcagGGTCTTTGTCCTTGCCGTGACAACGTTTCTTGATTGTTGGATGTATGGTTCCCGGATCATAGTGCCACTTAATTTTTTGAAATTTAACCTCTTCTCTTCA

upper sequence: GRMZM2G000937_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g02110.1 (Oryza sativa), 3'ss of exon 3
gtaagttattgttaaaattcatataaaccttctatctttcgtt-gtttaagatttttttatttcactacactggcttatcactattgtttcttgatttcacaaactggacatatgcagGGCCATTGTCCTTGCAGTAACAACACTCCTTGATTGGTGGATGTATGGTTCCTGGGTCATAGTGCCGC---TTAATTTTTTGAAATTCAACTTATTGTCTTCC
              |   | || |||   ||   | | | ||  | | |    || | | | |||  |    ||  || | ||||      |     |   ||  |     | ||||||| | |||||||||| || |||||| | |||||||| |||||||||||||||  ||||||||||||||   |||||||||||||||| ||  | || |||   
--------------atgatgatttaaggattgcttttcttgtaaggtcatttgttctctttgtcaaaattgaggaatacctctataaaccttatgccttttaatttt----tctgcagGGTCTTTGTCCTTGCTGTGACAACATTTCTTGATTGTTGGATGTATGGTTCCCAGGTCATAGTGCCGCCACTTAATTTTTTGAAATTTAATCTCTTCTCT---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactacactggcttatcactattgtttcttgatttcacaaactggacatatgcagGGCCATTGTCCTTGCAGTAACAACACTCCTTGATTGGTGGATGTATGGTTCCTGGGTCATAGTGCCGCTTAATTTTTTGAAATTCAACTTATTGTCTTCC
                          tcttgat  putative branch site (score: 4)
                   tattgttt  TA-rich tract