1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aggatcctaatgcatgcactatacatacatgatctcttggttatatcaaccatattgttgactgcaaactgtaacctaacaccattatgttttgtttcagGATATTAACTCTAGAGGAGGTAAAGCATCCCAGTCAGTTATCGAAACTACCCTTATGTCTTGTTGTAAAATTTAA
species | Zea mays |
transcript | AC203920.3_FGT004 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
tcaaccatattgttgactgcaaactgtaacctaacaccattatgttttgtttcagGATATTAACTCTAGAGGAGGTAAAGCATCCCAGTCAGTTATCGAAACTACCCTTATGTCTTGTTGTAAAATTTAA
acctaac putative branch site (score: 2)
ttttgtttc putative PPT
attatgttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggatcctaatgcatgcactatacatacatgatctcttggttatatcaaccatattgttgactgcaaactgtaacctaacaccattatgttttgtttcagGATATTAACTCTAGAGGAGGTAAAGCATCCCAGTCAGTTATCGAAACTACCCTTATGTCTTGTTGTAAAATTTAA
- - - - - tgcatgc
- - - - - - - - - - - - atacatg
- - - - - - - - - - - - - - - - - - - - - - -tcaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacca