1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtgtttctgtgggtctatttttttacaacatatttggtcacggtacattgctacaatgcagcaaaatttggtgttaattttcagtggttgattctacagGCTGGGTACAGTTAAAGCTGGCAGAAAAGGCCAATCTTGAGATTGCAAATTCAAAACCATCATCCGATTTGACAGAGGGAAAAGAAAATCAAAGCCGTGT
species | Zea mays |
transcript | GRMZM5G806649_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAATGTATTGGTGGGATCTGCTCTTGGTGCTGGCATCTGCTATCCACTTG GCTGGGTACAGTTAAAGCTGGCAGAAAAGGCCAATCTTGAGATTGCAAATTEST: gi|211308231|gb|FL450679.1|FL450679
genomic: GAATGTATTGGTGGGATCTGCTCTTGGTGCTGGCATCTGCTATCCACTTGgtattttcat ... gattctacagGCTGGGTACAGTTAAAGCTGGCAGAAAAGGCCAATCTTGAGATTGCAAATT
EST: GAATGTATTGGTGGGATCTGCTCTTGGTGCTGGCATCTGCTATCCACTTG GCTGGGTACAGTTAAAGCTGGCAGAAAAGGCCAATCTTGAGATTGCAAATTEST: gi|5005834|gb|AI711896.1|AI711896
genomic: GAATGTATTGGTGGGATCTGCTCTTGGTGCTGGCATCTGCTATCCACTTGgtattttcat ... gattctacagGCTGGGTACAGTTAAAGCTGGCAGAAAAGGCCAATCTTGAGATTGCAAATT
EST: GAATGTATTGGTGGGATCTGCTCTTGGTGCTGGCATCTGCTATCCACTTG GCTGGGTACAGTTAAAGCTGGCAGAAAAGGCCAATCTTGAGATTGCAAATTEST: gi|211214700|gb|FL050038.1|FL050038
genomic: GAATGTATTGGTGGGATCTGCTCTTGGTGCTGGCATCTGCTATCCACTTGgtattttcat ... gattctacagGCTGGGTACAGTTAAAGCTGGCAGAAAAGGCCAATCTTGAGATTGCAAATT
EST: GAATGTATTGGTGGGATCTGCTCTTGGTGCTGGCATCTGCTATCCACTTG GCTGGGTACAGTTAAAGCTGGCAGAAAAGGCNNNTCTTGAGATTGCAAATTEST: gi|32792742|gb|CD944978.1|CD944978
genomic: GAATGTATTGGTGGGATCTGCTCTTGGTGCTGGCATCTGCTATCCACTTGgtattttcat ... gattctacagGCTGGGTACAGTTAAAGCTGGCAGAAAAGGCCAATCTTGAGATTGCAAATT
EST: GATCTGCTCTTGGTGCTGGCATCTGCTATCCACTTG GCTGGGTACAGTTGAAGCTGGCAGAAAAGGCCAATCTTGAGATTGCAAATTEST: gi|166699371|gb|EG137373.1|EG137373
genomic: GATCTGCTCTTGGTGCTGGCATCTGCTATCCACTTGgtattttcat ... gattctacagGCTGGGTACAGTTAAAGCTGGCAGAAAAGGCCAATCTTGAGATTGCAAATT
EST: GAATGTATTGGTGGGATCTGCTCTTGGTGCTGGCATCTGCTATCCACTTG GCTGGGTACAGTTAAAGCEST: gi|76932862|gb|DV173210.1|DV173210
genomic: GAATGTATTGGTGGGATCTGCTCTTGGTGCTGGCATCTGCTATCCACTTGgtattttcat ... gattctacagGCTGGGTACAGTTAAAGC
EST: GAATGTATTGGTGGGATCTGCTCTTGGTGCTGGCATCTGCTATCCACTTG GCTGGGTACAGTTAAAGCTGGCAGAAAAGGCCAATCTTGAGATTGCAAATT
genomic: GAATGTATTGGTGGGATCTGCTCTTGGTGCTGGCATCTGCTATCCACTTGgtattttcat ... gattctacagGCTGGGTACAGTTAAAGCTGGCAGAAAAGGCCAATCTTGAGATTGCAAATT
acattgctacaatgcagcaaaatttggtgttaattttcagtggttgattctacagGCTGGGTACAGTTAAAGCTGGCAGAAAAGGCCAATCTTGAGATTGCAAATTCAAAACCATCATCCGATTTGACAGAGGGAAAAGAAAATCAAAGCCGTGT
tgttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgtttctgtgggtctatttttttacaacatatttggtcacggtacattgctacaatgcagcaaaatttggtgttaattttcagtggttgattctacagGCTGGGTACAGTTAAAGCTGGCAGAAAAGGCCAATCTTGAGATTGCAAATTCAAAACCATCATCCGATTTGACAGAGGGAAAAGAAAATCAAAGCCGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA