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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtcattggtgattcactatcctgtttgctgctctagggagtaatacataaacgtttgagacccggtgaattttgtcaactactctgtcctggttttcttcttgtccggtgactgttgtctaacatggttaccttgccctcaccgccttatagGGAGAGGAGCTAAGAAAGCAAATAGGCGCGCCATACTACATCGAGTGCAGCTCAAAGACCCAACTAGTATTGCCATCTGCTCATTCATCCGCTAACACGC

Basic information

species Zea mays
transcript GRMZM5G803949_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G803949_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g02840.1 (Oryza sativa), 3'ss of exon 5
gtatggtcattg-gtgattcactatcctgtttgctgctctagggagtaatacataaacgtttgagac-ccggtgaattttgtcaactactctgtcctggttttcttcttgtccggtgactgttgtctaacatggttaccttgccctcaccgccttatagGGAGAGGAGCTAAGAAAGCAAATAGGCGCGCCATACTACATCGAGTGCAGCTCAAAGACCCAACTAGTATTGCCATCTGCTCATTCATCCGCTAACACGC
|||  ||  | |  |  |    | |    ||   |  |    | || |  | | |     |||  || || ||| | |   |    | |  | || || |  | || |||| |  | | ||     |                          || ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||                                  
gtacagttgtggcattgtgggttgtttaattccttatttactgtagcatcagagatgtacttgcaactcctgtggactacat----tgccatatcttgatcatttttttgttccttaattgccactt--------------------------ttgtagGGAGAGGAACTAAGAAAGCAAATAGGCGCCCCATACTACATCGAATGCAGCTCAAAGACCCAACTA----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211356952|gb|FL222516.1|FL222516
EST:     CAGTTCTTTGTGGACCATCCTGGTGCTGTTCCCNTATCACTACTGCTCAG                         GGAGAGGAGCTA
genomic: CAGTTCTTTGTGGACCATCCTGGTGCTGTTCC--TATCACTACTGCTCAGgtatggtcat ... cgccttatagGGAGAGGAGCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttgtccggtgactgttgtctaacatggttaccttgccctcaccgccttatagGGAGAGGAGCTAAGAAAGCAAATAGGCGCGCCATACTACATCGAGTGCAGCTCAAAGACCCAACTAGTATTGCCATCTGCTCATTCATCCGCTAACACGC
                                      ccctcacc  CT-rich tract
                                                 ttata  TA-rich tract