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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttatctttgttgcttcatttgttttctgtaagcacgatgtagtttgaaaaaactcagatatctaacatgacattttccttttctgtcctttgttatagGGCTGGAAAAACTTTAGCAAGATTGCAAGGGATTTGGTGCGTTGTATGCAAAAAATAGATGGTGACTATTATCCTGAG

Basic information

species Zea mays
transcript GRMZM2G452580_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G452580_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g48990.1 (Oryza sativa), 3'ss of exon 5
ttttatctttgttgcttcatttgttttctgtaagcacgatgtagtt-tgaaaaaactcagatatctaacatgacattttccttttctgtcctttgttatagGGCTGGAAAAACTTTAGCAAGATTGCAAGGGATTTGGTGCGTTGTATGCAAAAAATAGATGGTGACTATTATCCTGAG
   | |||||     |    | | | ||| |          || |  || ||||      ||| | |   |  | | |||||| | | |  | |||  ||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
acctttctttacaagtaatgtagatctctatcctggttgcataatagtggaaaatggttcatagc-attttagcttgttccttctgttttatgtgtattagGGTTGGAAGAACTTTAGCAAGATCGCAAGGGATTTGGTGCGCTGTATGCAGAAAATAGATGGTGATTATTATCCTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaaaaaactcagatatctaacatgacattttccttttctgtcctttgttatagGGCTGGAAAAACTTTAGCAAGATTGCAAGGGATTTGGTGCGTTGTATGCAAAAAATAGATGGTGACTATTATCCTGAG
                atctaac  putative branch site (score: 2)
                           cattttccttttctgt  putative PPT
                                             tttgttata  TA-rich tract