1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acccattcgagtatgaaaaacttggtattgtagtggagcagccttatttttttcaagtcatcatttttttctttgaatgataaacatatcatcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG
species | Zea mays |
transcript | GRMZM2G442404_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGATGAGCGAAAGAGAATTGAAAATGCTGGTGGTATTGTCATTTGGGCTG GTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCCCGTGCATTTGGCAATCEST: gi|4776156|gb|AI665159.1|AI665159
genomic: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTGgtaagcatgt ... atcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATC
EST: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTG GTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATCEST: gi|32863266|gb|CF002948.1|CF002948
genomic: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTGgtaagcatgt ... atcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATC
EST: TGCTGGTGGTATTGTCATTTGGGCTG GTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATCEST: gi|71307033|gb|DR789670.1|DR789670
genomic: TGCTGGTGGTATTGTCATTTGGGCTGgtaagcatgt ... atcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATC
EST: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTG GTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATCEST: gi|111188864|gb|EE287000.1|EE287000
genomic: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTGgtaagcatgt ... atcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATC
EST: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTG GTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATCEST: gi|71428856|gb|DR809906.1|DR809906
genomic: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTGgtaagcatgt ... atcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATC
EST: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTG GTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATCEST: gi|211366188|gb|FL288085.1|FL288085
genomic: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTGgtaagcatgt ... atcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATC
EST: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTG GTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATCEST: gi|149051712|gb|EE155827.2|EE155827
genomic: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTGgtaagcatgt ... atcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATC
EST: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTG GTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATCEST: gi|148950086|gb|EC895621.2|EC895621
genomic: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTGgtaagcatgt ... atcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATC
EST: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTG GTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATCEST: gi|8103065|gb|AW927729.1|AW927729
genomic: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTGgtaagcatgt ... atcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATC
EST: TGATGAGCGAAAGAGAATTGAAAATGCTGGTGGTATTGTCATTTGGGCTG GTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCCCGTGCATTTGGCAATCEST: gi|37374878|gb|CF623839.1|CF623839
genomic: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTGgtaagcatgt ... atcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATC
EST: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTG GTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATCEST: gi|60343417|gb|DN210390.1|DN210390
genomic: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTGgtaagcatgt ... atcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATC
EST: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTG GTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATCEST: gi|71317759|gb|DR795638.1|DR795638
genomic: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTGgtaagcatgt ... atcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATC
EST: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTG GTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATCEST: gi|86466746|gb|DY233116.1|DY233116
genomic: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTGgtaagcatgt ... atcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATC
EST: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTG GTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATCEST: gi|211366190|gb|FL288087.1|FL288087
genomic: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTGgtaagcatgt ... atcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATC
EST: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTG GTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATC
genomic: TGATGAGCGAAAGAGAATAGAAAATGCTGGTGGTATTGTCATTTGGGCTGgtaagcatgt ... atcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATC
atttttttcaagtcatcatttttttctttgaatgataaacatatcatcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG
tcatcttccc CT-rich tract
atttttttctttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccattcgagtatgaaaaacttggtattgtagtggagcagccttatttttttcaagtcatcatttttttctttgaatgataaacatatcatcttcccagGTACTTGGAGGGTAGGTGGTGTATTGGCGATGTCTCGTGCATTTGGCAATCGTTTACTGAAGCCATATGTGGTGGCGGAACCTGAAATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG