1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaggatgtgaatggttcattcttttgtagttcataacctaaaatatgaatcgagttgagagcaaggtattttacttatacgattctcactaacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGGTTACTTCCCTTACTATACA
species | Zea mays |
transcript | GRMZM2G330650_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAAEST: gi|78122353|gb|DV540737.1|DV540737
genomic: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAA
EST: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAAEST: gi|211320442|gb|FL345947.1|FL345947
genomic: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAA
EST: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAA
genomic: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAA
tgaatcgagttgagagcaaggtattttacttatacgattctcactaacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGGTTACTTCCCTTACTATACA
cactaac putative branch site (score: 117)
tattttacttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaggatgtgaatggttcattcttttgtagttcataacctaaaatatgaatcgagttgagagcaaggtattttacttatacgattctcactaacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAACAGATCAAGCTATTGAACGTTCAAAAATGGTTACTTCCCTTACTATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - gtgaatg