1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...cattaattttctagttgcgctctataatctgaagctataacagtgagttagtgaccatttattttggtagtctgatttgatattcaaatgaactgttcagGAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGGTTGTGGGCTAAGAGGCAGAACCATACATACCGGCCCAATCGTCCATTGA
species | Zea mays |
transcript | GRMZM2G303655_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTTCCGCATTCAGAAGCAGTTGCCTTTTACTTCATTCAAG GAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGGEST: gi|211335220|gb|FL322949.1|FL322949
genomic: GTTTCCGCATTCAGAAGCAGTTGCCTTTTACTTCATTCAAGgtattggccc ... aactgttcagGAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGG
EST: GTTTCCGCATTCAGAAGCAGTTGCCTTTTACTTCATTCAAG GAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGGEST: gi|211222669|gb|FL338354.1|FL338354
genomic: GTTTCCGCATTCAGAAGCAGTTGCCTTTTACTTCATTCAAGgtattggccc ... aactgttcagGAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGG
EST: GTTTCCGCATTCAGAAGCAGTTGCCTTTTACTTCATTCAAG GAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGGEST: gi|211531762|gb|FL336391.1|FL336391
genomic: GTTTCCGCATTCAGAAGCAGTTGCCTTTTACTTCATTCAAGgtattggccc ... aactgttcagGAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGG
EST: AAGCAGTTGCCTTTTACTTCATTCAAG GAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGGEST: gi|211265134|gb|FL336164.1|FL336164
genomic: AAGCAGTTGCCTTTTACTTCATTCAAGgtattggccc ... aactgttcagGAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGG
EST: GTTTCCGCATTCAGAAGCAGTTGCCTTTTACTTCATTCAAG GAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGGEST: gi|13558283|gb|BG549639.1|BG549639
genomic: GTTTCCGCATTCAGAAGCAGTTGCCTTTTACTTCATTCAAGgtattggccc ... aactgttcagGAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGG
EST: AAGTTCACAGTTTCCGCATTCAGAAGCAGTTGCCTTTTACTTCATTCAAG GAGGAAGCTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGGEST: gi|211096696|gb|FL354066.1|FL354066
genomic: AAGTTCACAGTTTCCGCATTCAGAAGCAGTTGCCTTTTACTTCATTCAAGgtattggccc ... aactgttcagGAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGG
EST: GTTTCCGCATTCAGAAGCAGTTGCCTTTTACTTCATTCAAG GAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGGEST: gi|211263206|gb|FL357456.1|FL357456
genomic: GTTTCCGCATTCAGAAGCAGTTGCCTTTTACTTCATTCAAGgtattggccc ... aactgttcagGAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGG
EST: GTTTCCGCATTCAGAAGCAGTTGCCTTTTACTTCATTCAAG GAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGGEST: gi|211148456|gb|FL367819.1|FL367819
genomic: GTTTCCGCATTCAGAAGCAGTTGCCTTTTACTTCATTCAAGgtattggccc ... aactgttcagGAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGG
EST: GTTTCCGCATTCAGAAGCAGTTGCCTTTTACTTCATTCAAG GAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGG
genomic: GTTTCCGCATTCAGAAGCAGTTGCCTTTTACTTCATTCAAGgtattggccc ... aactgttcagGAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGG
agttagtgaccatttattttggtagtctgatttgatattcaaatgaactgttcagGAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGGTTGTGGGCTAAGAGGCAGAACCATACATACCGGCCCAATCGTCCATTGA
atttgatattcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattaattttctagttgcgctctataatctgaagctataacagtgagttagtgaccatttattttggtagtctgatttgatattcaaatgaactgttcagGAGGAAGTTGCAAAGGAATTTGGCATCCCTGTACAGTTTCAGCGCTTCTGGTTGTGGGCTAAGAGGCAGAACCATACATACCGGCCCAATCGTCCATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - ctgaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatttg