1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggcttaatgtttacacgatagtagtagaatgatgaatatgttcatagggttgtcagtttccttttaactaacaataccatgcattcttcattctctgcagTCATCTGTTCTTCATTCCCAACCGAAGTCAACTGTTGGAACACCTGCTTATATTGCACCTGAAGTTCTGTTGAAAAAAGAATATGATGGCAAG
species | Zea mays |
transcript | GRMZM2G171435_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGGGAGTGATGCTCCTCGCTTGAAGATATGTGACTTCGGTTATTCCAAG TCATCTGTTCTTCATTCGCAACCGAAGTCAACTGTTGEST: gi|60353530|gb|DN220503.1|DN220503
genomic: ATGGGAGTGATGCTCCTCGCTTGAAGATATGTGACTTCGGTTATTCCAAGgttcttacac ... ttctctgcagTCATCTGTTCTTCATTCCCAACCGAAGTCAACTGTTG
EST: ATGGGAGTGATGCTCCTCGCTTGAAGATATGTGACTTCGGTTATTCCAAG TCATCTGTTCTTCATTCCCAACCGAAGTCAACTGTTGGAACACCTGCTTATEST: gi|148932906|gb|EE285698.2|EE285698
genomic: ATGGGAGTGATGCTCCTCGCTTGAAGATATGTGACTTCGGTTATTCCAAGgttcttacac ... ttctctgcagTCATCTGTTCTTCATTCCCAACCGAAGTCAACTGTTGGAACACCTGCTTAT
EST: ATGGGAGTGATGCTCCTCGCTTGAAGATATGTGACTTCGGTTATTCCAAG TCATCTGTTCTTCATTCCCAACCGAAGTCAACTGTTGGAACACCTGCTTATEST: gi|78107855|gb|DV526273.1|DV526273
genomic: ATGGGAGTGATGCTCCTCGCTTGAAGATATGTGACTTCGGTTATTCCAAGgttcttacac ... ttctctgcagTCATCTGTTCTTCATTCCCAACCGAAGTCAACTGTTGGAACACCTGCTTAT
EST: ATGGGAGTGATGCTCCTCGCTTGAAGATATGTGACTTCGGTTATTCCAAG TCATCTGTTCTTCATTCCCAACCGAAGTCAACTGTTGGAACACCTGCTTAT
genomic: ATGGGAGTGATGCTCCTCGCTTGAAGATATGTGACTTCGGTTATTCCAAGgttcttacac ... ttctctgcagTCATCTGTTCTTCATTCCCAACCGAAGTCAACTGTTGGAACACCTGCTTAT
agggttgtcagtttccttttaactaacaataccatgcattcttcattctctgcagTCATCTGTTCTTCATTCCCAACCGAAGTCAACTGTTGGAACACCTGCTTATATTGCACCTGAAGTTCTGTTGAAAAAAGAATATGATGGCAAG
aactaac putative branch site (score: 1)
cattcttcattctct putative PPT
ttttaactaacaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcttaatgtttacacgatagtagtagaatgatgaatatgttcatagggttgtcagtttccttttaactaacaataccatgcattcttcattctctgcagTCATCTGTTCTTCATTCCCAACCGAAGTCAACTGTTGGAACACCTGCTTATATTGCACCTGAAGTTCTGTTGAAAAAAGAATATGATGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - -tgatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattc