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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcctctgtcagttaattgtacatgggtagtttttccattatttttcttctctagactgttcccttgctaaatttgtgccaatatttgatgtgattgcagTGATGAGGGTGTTCACTGGGCAGTGCAAAATGGTCTCCATCTATCAAGAAGCACTGTGGTGTACTTCAAGCACAATGATATGGCTTCACTTGCAAGCACT

Basic information

species Zea mays
transcript GRMZM2G165613_T02
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6194593|gb|AW146697.1|AW146697
EST:     ATTCAGTGTGATACCTGCCTTCTGTAAGAAAGGAGATATCNATAGTCGC
genomic: ATTCAGTGTGATACCTGCCTTCTGTAAGAAAGGAGATATC-ATAGTCGC
EST: gi|211397241|gb|FL471415.1|FL471415
EST:     TGTGATACCTCCCTTCTGTAAGAAAGGAGATATCATAGTCGC                         TGATGAGGGTGTTCACTGGGCAGTG-AAAATGGTCTCCATCTATCAAGAAG
genomic: TGTGATACCTGCCTTCTGTAAGAAAGGAGATATCATAGTCGCgtaagttcac ... gtgattgcagTGATGAGGGTGTTCACTGGGCAGTGCAAAATGGTCTCCATCTATCAAGAAG
EST: gi|13388351|gb|BG462287.1|BG462287
EST:     ATATTCAGTGTGATACCTGCCTTCTGTAAGAAAGGAGATATCATAGTCGC                         TGATGAGGGTGTTCACTGGG
genomic: ATATTCAGTGTGATACCTGCCTTCTGTAAGAAAGGAGATATCATAGTCGCgtaagttcac ... gtgattgcagTGATGAGGGTGTTCACTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttctctagactgttcccttgctaaatttgtgccaatatttgatgtgattgcagTGATGAGGGTGTTCACTGGGCAGTGCAAAATGGTCTCCATCTATCAAGAAGCACTGTGGTGTACTTCAAGCACAATGATATGGCTTCACTTGCAAGCACT
                                   aatatttgat  TA-rich tract