Sequence
atgc intronic sequence ATGC exonic sequencegtatccttaaactcatttatgtacctatacaattttcttcgtgagtatatgacttcaacaaccttggacgtcggccttaacaaactgtttgcagTTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACTCTATCAAACAGCTTGGAGACTGTTTTGACCGTGGCTGGACTCTATTACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G164175_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g39810.1 (Oryza sativa), 3'ss of exon 3
gtatccttaaactcatttatgtacctatacaatt--ttcttcgtgagtatatgacttcaacaacct--tggacgtcggccttaacaaactgtttgcagTTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACTCTATCAAACAGCTTGGAGACTGTTTTGACCGTGGCTGGACTCTATTACT
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gtatccttgaactcatttatgtagatatgatgttcctttttcgtaaataaacaagtccattttcctggtgaatggtgaccttaacaagtcatttccagCTATTTTCACAGCTTGTTAACTGGTTCATGTTCTTCTGTATTACACGGACTCTCTCAAACAGCATGGAGACAGTTTTGACTGTTACTGGACTTTACTATT
upper sequence: GRMZM2G164175_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g02110.1 (Oryza sativa), 3'ss of exon 2
--gtatccttaaactcatttatgtacctatacaattttc---ttcgtgagtatatgacttcaacaaccttgg---acgtcggccttaacaaactgtttgcagTTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACTCTATCAAACAGCTTGGAGACTGTTTTGACCGTGGCTGGACTCTATTACT
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ccgtatccttgagctcatttctgta--tatacgattttctttttcatgaataaaggaagtccattttcctggtgaatggtgaccttaacaactcatttccagTTATTTTCGCAGCTGGTTAACTGGTTCATGCTCTTCTGTATCACGTGTACTCTCTCAAACAGCATGGAGACAGTTTTGACTATTACTGGACTTTACTATT
upper sequence: GRMZM2G164175_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv11s0037g01100.t01 (Vitis vinifera), 3'ss of exon 5
--------------------------------------------------------------gtatccttaaactcatttatgtacctatacaattttcttcgtgagtatatgacttca---------acaaccttggacgtcggccttaacaaactgtttgcagTTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACTCTATCAAACAGCTTGGAGACTGTTTTGACCGTGGCTGGACTCTATTACT
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gtatccttttataatgtgttctttgcagcttgtaattttatgaattttatgtatcaatttttgttttcccatgttggaagctctcttcttatgattgttaccagagaaaaactactttagaaatcattacattcattgaagatggtatacttaattctatggcagCTTTTTTCACAGTTGGTGAACTGGTTTATGTTTTTCTGTTTCACTCGTACATTGTCAAATAGTTTGGAGACTGTTCTTACCCTTGTGGGCATATACTATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgtgagtatatgacttcaacaaccttggacgtcggccttaacaaactgtttgcagTTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACTCTATCAAACAGCTTGGAGACTGTTTTGACCGTGGCTGGACTCTATTACT
ggccttaac putative branch site
ttaacaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatccttaaactcatttatgtacctatacaattttcttcgtgagtatatgacttcaacaaccttggacgtcggccttaacaaactgtttgcagTTATTTTCTCAGTTGGTTAACTGGTTCATGTTTTTCTGTATCACACGGACTCTATCAAACAGCTTGGAGACTGTTTTGACCGTGGCTGGACTCTATTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA