1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttttacctccttgctaaagttaggaatttcttcgaaacacaatttactatggatccaatttatgcaatttggattgttctgatttgtcaaaccatctcagGATTTTACCTCCTTGCTAAAGTGGAAGAGGCTGCTGACAAAACTATCTACAATTGGACTCATCAGATTGTTAGTGGTCATACTCTTAAGCATCTATGTGC
species | Zea mays |
transcript | GRMZM2G147709_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTAATTCCACCGATGTATACACATTCAAGCTACTGGTTGTGGGCAGCAG GATTTTACCTCCTTGCTAAAGTGGAAGAGGCTGCTGACAAAACTATCTACAEST: gi|91868409|gb|EB400024.1|EB400024
genomic: AGTAATTCCACCGATGTATACACATTCAAGCTACTGGTTGTGGGCAGCAGgtttgtgagt ... accatctcagGATTTTACCTCCTTGCTAAAGTGGAAGAGGCTGCTGACAAAACTATCTACA
EST: AGTAATTCCACCGATGTATACACATTCAAGCTACTGGTTGTGGGCAGCAG GATTTTACCTCCTTGCTAAAGTGGAAGAGGCTGCTGACAAAACTATCTACAEST: gi|67012775|gb|CO441524.1|CO441524
genomic: AGTAATTCCACCGATGTATACACATTCAAGCTACTGGTTGTGGGCAGCAGgtttgtgagt ... accatctcagGATTTTACCTCCTTGCTAAAGTGGAAGAGGCTGCTGACAAAACTATCTACA
EST: AGTAATTCCACCGATGTATACACATTCAAGCTACTGGTTGTGGGCAGCAG GATTTTACCTCCTTGCTAAAGTGGAAGAGGCTGCTGACAAAACTATCTACAEST: gi|211335488|gb|FL454133.1|FL454133
genomic: AGTAATTCCACCGATGTATACACATTCAAGCTACTGGTTGTGGGCAGCAGgtttgtgagt ... accatctcagGATTTTACCTCCTTGCTAAAGTGGAAGAGGCTGCTGACAAAACTATCTACA
EST: AGTAATTCCACCGATGTATACACATTCAAGCTACTGGTTGTGGGCAGCAG GATTTTACCTCCTTGCTAAAGTGGAAGAGGCTGCTGACAAAACTATCTACAEST: gi|6696044|gb|AW289152.1|AW289152
genomic: AGTAATTCCACCGATGTATACACATTCAAGCTACTGGTTGTGGGCAGCAGgtttgtgagt ... accatctcagGATTTTACCTCCTTGCTAAAGTGGAAGAGGCTGCTGACAAAACTATCTACA
EST: AGTAATTCCACCGATGTATACACATTCAAGCTACTGGTTGTGGGCAGCAG GATTTTACCTCCTTGCTAAAGTGGAAGAGGCTGCTGACAAAACTATCTACA
genomic: AGTAATTCCACCGATGTATACACATTCAAGCTACTGGTTGTGGGCAGCAGgtttgtgagt ... accatctcagGATTTTACCTCCTTGCTAAAGTGGAAGAGGCTGCTGACAAAACTATCTACA
actatggatccaatttatgcaatttggattgttctgatttgtcaaaccatctcagGATTTTACCTCCTTGCTAAAGTGGAAGAGGCTGCTGACAAAACTATCTACAATTGGACTCATCAGATTGTTAGTGGTCATACTCTTAAGCATCTATGTGC
ttctgat putative branch site (score: 53)
ccatctc putative PPT
aatttatgcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttacctccttgctaaagttaggaatttcttcgaaacacaatttactatggatccaatttatgcaatttggattgttctgatttgtcaaaccatctcagGATTTTACCTCCTTGCTAAAGTGGAAGAGGCTGCTGACAAAACTATCTACAATTGGACTCATCAGATTGTTAGTGGTCATACTCTTAAGCATCTATGTGC
- - - -tccttgc
- - - - - - - - - - - - - - - - - aaacaca
- - - - - - - - - - - - - - - - - - - - - - - - -tggatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgca