1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gcaagtattgtactactagattgttgatttgaattttccagataacatgcaacatatttgaacctgtttccatttcaaatcagtaactgggaatgtaaatacattttcagGGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAACCAGGGTATGCTTCGTTGCCAGTTGCATATGCCAGAGCTGGCAGTGAGC
species | Zea mays |
transcript | GRMZM2G142502_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAG GGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAAEST: gi|78082996|gb|DV511389.1|DV511389
genomic: CTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAGgcaagtattg ... acattttcagGGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAA
EST: CTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAG GGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAAEST: gi|78081830|gb|DV510242.1|DV510242
genomic: CTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAGgcaagtattg ... acattttcagGGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAA
EST: CTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAG GGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAAEST: gi|211422460|gb|FK998906.1|FK998906
genomic: CTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAGgcaagtattg ... acattttcagGGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAA
EST: CTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAG GGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAAEST: gi|101399620|gb|EB821656.1|EB821656
genomic: CTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAGgcaagtattg ... acattttcagGGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAA
EST: CTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAG GGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAAEST: gi|71438193|gb|DR819243.1|DR819243
genomic: CTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAGgcaagtattg ... acattttcagGGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAA
EST: CTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAG GGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAAEST: gi|148970848|gb|EE021623.2|EE021623
genomic: CTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAGgcaagtattg ... acattttcagGGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAA
EST: CTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAG GGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAA
genomic: CTGTGGATGATGCCAGCAAAATTTTGTCCTTGACAGGTGTTGTTATTGAGgcaagtattg ... acattttcagGGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAA
atttgaacctgtttccatttcaaatcagtaactgggaatgtaaatacattttcagGGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAACCAGGGTATGCTTCGTTGCCAGTTGCATATGCCAGAGCTGGCAGTGAGC
cagtaac putative branch site (score: 2)
cattttc putative PPT
aatgtaaatacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtattgtactactagattgttgatttgaattttccagataacatgcaacatatttgaacctgtttccatttcaaatcagtaactgggaatgtaaatacattttcagGGTGTAACTGGTTCATCAATTTTGACAGCACTGTCATCATGGATGTGTAAACCAGGGTATGCTTCGTTGCCAGTTGCATATGCCAGAGCTGGCAGTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT