1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gccttttgttctagagagtaattcaatgagttatcccagttttatctaacttaattaactgaaatgaaaataagttcacatgtttattccatgttgtcagCTTCTTCGATCCTGGCCCACATGGAACTGGAAGGTATACGATGGAAATGCTTCCTGAAATAGAACAGAGGGACTTCAGGAAGGGTGCCCAG
species | Zea mays |
transcript | GRMZM2G138505_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATTACATATATAATTATCTGATGGGAACCAATGTCAGTTTCATTGATTG CTTCTTCGATCCTGGCCCACATGGAACTGGAAGGTATACGATGGAAATGCTEST: gi|31355242|gb|CD439599.1|CD439599
genomic: GATTACATATATAATTATCTGATGGGAACCAATGTCAGTTTCATTGATTGgtaagattgc ... atgttgtcagCTTCTTCGATCCTGGCCCACATGGAACTGGAAGGTATACGATGGAAATGCT
EST: ATTACATATATAATTATCTGATGGGAAC-AATGTCCAGTT-CATTGATTG CTTCTTCGATCC
genomic: ATTACATATATAATTATCTGATGGGAACCAATGTC-AGTTTCATTGATTGgtaagattgc ... atgttgtcagCTTCTTCGATCC
ctaacttaattaactgaaatgaaaataagttcacatgtttattccatgttgtcagCTTCTTCGATCCTGGCCCACATGGAACTGGAAGGTATACGATGGAAATGCTTCCTGAAATAGAACAGAGGGACTTCAGGAAGGGTGCCCAG
aattaac putative branch site (score: 149)
ttaattaactgaaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccttttgttctagagagtaattcaatgagttatcccagttttatctaacttaattaactgaaatgaaaataagttcacatgtttattccatgttgtcagCTTCTTCGATCCTGGCCCACATGGAACTGGAAGGTATACGATGGAAATGCTTCCTGAAATAGAACAGAGGGACTTCAGGAAGGGTGCCCAG
- -ttttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcacatg