1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tactcttttatgcgactaaaccggagacaagttgtgccatataaatgtgctgtgacgcgagattcatactttatctgagtaattgtgtttatcatcccagGGGTTGCTTGAAAACACGGAGAAAGACAGAGTGAGGAGGTTGATTAGACTAAAGCCCCCTGTGGAGCCATAATTTGCATGTAAAGCATATGTTGGCGTTG
species | Zea mays |
transcript | GRMZM2G138053_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGACAAATACGGGAGGATCTGCTTGTGCCTTGATGAGATTGTTTGGAAG GGGTTGCTTGAAAACACGGAGAAAGACAGAGTGAGGAGGTTGATTAGACTAEST: gi|50329775|gb|CO524901.1|CO524901
genomic: TTGACAAATACGGGAGGATCTGCTTGTGCCTTGATGAGATTGTTTGGAAGgtacatctcc ... atcatcccagGGGTTGCTTGAAAACACGGAGAAAGACAGAGTGAGGAGGTTGATTAGACTA
EST: TTGACAAATACGGGAGGATCTGCTTGTGCCTTGATGAGATTGTTTGGAAG GGGTTGCTTGAAAACACGGAGAAAGACAGAGTGAGGAGGTTGATTAGACTAEST: gi|30160522|gb|CB924251.1|CB924251
genomic: TTGACAAATACGGGAGGATCTGCTTGTGCCTTGATGAGATTGTTTGGAAGgtacatctcc ... atcatcccagGGGTTGCTTGAAAACACGGAGAAAGACAGAGTGAGGAGGTTGATTAGACTA
EST: TTGACAAATACGGGAGGATCTGCTTGTGCCTTGATGAGATTGTTTGGAAG GGGTTGCTTGAAAACACGGAGAAAGACAGAGTGAGGAGGTTGATTAGACTAEST: gi|113795695|gb|DW912380.1|DW912380
genomic: TTGACAAATACGGGAGGATCTGCTTGTGCCTTGATGAGATTGTTTGGAAGgtacatctcc ... atcatcccagGGGTTGCTTGAAAACACGGAGAAAGACAGAGTGAGGAGGTTGATTAGACTA
EST: GGAGGATCTGCTTGTGCCTTGATGAGATTGTTTGGAAG GGGTTGCTTGAAAACACGGAGAAAGACAGAGTGAGGAGGTTGATTAGACTAEST: gi|32937551|gb|CF042370.1|CF042370
genomic: GGAGGATCTGCTTGTGCCTTGATGAGATTGTTTGGAAGgtacatctcc ... atcatcccagGGGTTGCTTGAAAACACGGAGAAAGACAGAGTGAGGAGGTTGATTAGACTA
EST: TTGACAAATACGGGAGGATCTGCTTGTGCCTTGATGAGATTGTTTGGAAG GGTTTGCTTGAAAACCCGGAGAAAGACAGAGTGAGGAGGTTGATTAGACTAEST: gi|15177341|gb|BI398280.1|BI398280
genomic: TTGACAAATACGGGAGGATCTGCTTGTGCCTTGATGAGATTGTTTGGAAGgtacatctcc ... atcatcccagGGGTTGCTTGAAAACACGGAGAAAGACAGAGTGAGGAGGTTGATTAGACTA
EST: TTGACAAATACGGGAGGATCTGCTTGTGCCTTGATGAGATTGTTTGGAAG GGGTTGCTTGAAAACACGGAGAAAGACAGAGTGAGGAGGTTGATTAGACTA
genomic: TTGACAAATACGGGAGGATCTGCTTGTGCCTTGATGAGATTGTTTGGAAGgtacatctcc ... atcatcccagGGGTTGCTTGAAAACACGGAGAAAGACAGAGTGAGGAGGTTGATTAGACTA
tgtgctgtgacgcgagattcatactttatctgagtaattgtgtttatcatcccagGGGTTGCTTGAAAACACGGAGAAAGACAGAGTGAGGAGGTTGATTAGACTAAAGCCCCCTGTGGAGCCATAATTTGCATGTAAAGCATATGTTGGCGTTG
tcatccc CT-rich tract
atactttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactcttttatgcgactaaaccggagacaagttgtgccatataaatgtgctgtgacgcgagattcatactttatctgagtaattgtgtttatcatcccagGGGTTGCTTGAAAACACGGAGAAAGACAGAGTGAGGAGGTTGATTAGACTAAAGCCCCCTGTGGAGCCATAATTTGCATGTAAAGCATATGTTGGCGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG