1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtgagtaataaaggaattccatatcttttagtttctatacatctctaccttcatgtgatgatgacttggtttagggtatactgattattatctttgtctatgtcattacagCTAAAGAAAGACTCTATCCAGTTGCCGATGCAACTACCTTCTTTACTGATATGCACTACGTCCTTCGTGTGTTGGCTGCTGGGGATATCCGAACCGTGTG
species | Zea mays |
transcript | GRMZM2G134396_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGATT CTAAAGAAAGACTCTATCCAGTTGCCGATGCAACTACCTTCTTTACTGATAEST: gi|32929645|gb|CF034457.1|CF034457
genomic: CCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGATTgtgagtaata ... gtcattacagCTAAAGAAAGACTCTATCCAGTTGCCGATGCAACTACCTTCTTTACTGATA
EST: TACCCCAATAAAGATT CTAAAGAAAGACTCTATCCAGTTGTCGATGCAACTACCTTCTTTACTGATAEST: gi|19058010|gb|BM736677.1|BM736677
genomic: TACCCCAATAAAGATTgtgagtaata ... gtcattacagCTAAAGAAAGACTCTATCCAGTTGCCGATGCAACTACCTTCTTTACTGATA
EST: CCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGATT CTAAAGAAAGACTCTATCCAGTTGCCGATGCAACTACCTTCTTTACTGATAEST: gi|50336750|gb|CO531876.1|CO531876
genomic: CCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGATTgtgagtaata ... gtcattacagCTAAAGAAAGACTCTATCCAGTTGCCGATGCAACTACCTTCTTTACTGATA
EST: CCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGATT CTAAAGAAAGACTCTATCCAGTTGCCGATGCAACTACCTTCTTTACTGATAEST: gi|22490387|gb|BU050310.1|BU050310
genomic: CCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGATTgtgagtaata ... gtcattacagCTAAAGAAAGACTCTATCCAGTTGCCGATGCAACTACCTTCTTTACTGATA
EST: CCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGATT CTAAAGAAAGACTCTATCCAGTTGCCGATGCAACTACCTTCTTTACTGATAEST: gi|87153046|gb|DY397835.1|DY397835
genomic: CCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGATTgtgagtaata ... gtcattacagCTAAAGAAAGACTCTATCCAGTTGCCGATGCAACTACCTTCTTTACTGATA
EST: CCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGATT CTAAAGAAAGACTCTATCCAGTTGCCGATGCAACTACCTTCTTTACTGATA
genomic: CCATTTCGAAATGGTTGATGGCGTCATTCATGTGTACCCCAATAAAGATTgtgagtaata ... gtcattacagCTAAAGAAAGACTCTATCCAGTTGCCGATGCAACTACCTTCTTTACTGATA
gatgatgacttggtttagggtatactgattattatctttgtctatgtcattacagCTAAAGAAAGACTCTATCCAGTTGCCGATGCAACTACCTTCTTTACTGATATGCACTACGTCCTTCGTGTGTTGGCTGCTGGGGATATCCGAACCGTGTG
tactgat putative branch site (score: 2)
tatactgattattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaataaaggaattccatatcttttagtttctatacatctctaccttcatgtgatgatgacttggtttagggtatactgattattatctttgtctatgtcattacagCTAAAGAAAGACTCTATCCAGTTGCCGATGCAACTACCTTCTTTACTGATATGCACTACGTCCTTCGTGTGTTGGCTGCTGGGGATATCCGAACCGTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT